Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq616 129 8e-25 >seq616 Length=79441 Score = 129 bits (142), Expect = 8e-25 Identities = 295/442 (67%), Gaps = 4/442 (1%) Strand=Plus/Minus Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 |||||| | |||||| || || | || || || | |||| || ||||| || || || Sbjct 56672 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTGCCGCC 56613 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||| | ||||| ||| || || || || || | |||||||||| | |||||||| Sbjct 56612 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 56553 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT--GCTAATTGATAGA 72300 || || || || || || | ||| |||| ||||| || || || | | Sbjct 56552 TGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTCAAA-- 56495 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || ||||| || || | || || |||| || ||| | || | ||||| || || ||| Sbjct 56494 CCGATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAATACCC 56435 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 | || ||| || |||| | | |||||||| || | ||| | | ||| Sbjct 56434 GCAATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATAGCGTT 56375 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || |||||||| | || || || || || || || | |||| || |||||||||| Sbjct 56374 CCAGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAGATTGTAC 56315 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 || || ||||||| || |||||| ||| || || ||||| || ||||| | ||| Sbjct 56314 GTTTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATAAGCATG 56255 Query 72541 TGCTGAGGTCTTTCAACGATCT 72562 || || ||||||||| ||| || Sbjct 56254 TGTTGTGGTCTTTCAGCGACCT 56233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670982866512600