Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq2276 82.4 6e-11 >seq2276 Length=29858 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || ||| | ||||| | ||||| || ||| ||||||||||| || ||| ||| Sbjct 6555 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 6496 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||||||| | || || ||||| ||| || || | |||||||| || || || Sbjct 6495 GC-CTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGT 6437 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| ||||| |||||||| Sbjct 6436 CAGAGTTTTCACAAAGATTTGCAT 6413 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || ||| | ||||| | ||||| || ||| ||||||||||| || ||| ||| Sbjct 7160 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 7101 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||||||| | || || ||||| ||| || || | |||||||| || || || Sbjct 7100 GC-CTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGT 7042 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| ||||| |||||||| Sbjct 7041 CAGAGTTTTCACAAAGATTTGCAT 7018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362096944010535