Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2276 132 1e-25 seq1455 100 7e-16 seq7835 91.5 3e-13 >seq2276 Length=29858 Score = 132 bits (146), Expect = 1e-25 Identities = 118/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| | |||||||||||| || || |||||||||||||||||||||||| Sbjct 6555 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 6496 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || |||||||| || | ||||| | ||| ||| || || || ||||| ||||| ||||| Sbjct 6495 GCCTTTACATTCTCAATTGTATC-CGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGT 6437 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||| || |||||| Sbjct 6436 CAGAGTTTTCACAAAGATTTGCATT 6412 Score = 132 bits (146), Expect = 1e-25 Identities = 118/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| | |||||||||||| || || |||||||||||||||||||||||| Sbjct 7160 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 7101 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || |||||||| || | ||||| | ||| ||| || || || ||||| ||||| ||||| Sbjct 7100 GCCTTTACATTCTCAATTGTATC-CGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGT 7042 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||| || |||||| Sbjct 7041 CAGAGTTTTCACAAAGATTTGCATT 7017 Score = 129 bits (142), Expect = 1e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| |||||||| |||||||| || ||||| || |||||||| ||||| Sbjct 7461 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 7402 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || |||||||| | |||||| | ||| ||||| ||||| || || ||||||||| Sbjct 7401 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 7342 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||| || |||||| Sbjct 7341 AGCGTTTTCACAAAGATTTGCATT 7318 Score = 123 bits (136), Expect = 6e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| || ||||| |||||||| || ||||| || |||||||| ||||| Sbjct 6254 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 6195 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || |||||||| | |||||| | ||| ||||| ||||| || || ||||||||| Sbjct 6194 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 6135 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || ||||| Sbjct 6134 AGCGTTTTCACAAAGATTTGCAT 6112 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| | | ||| ||||| || || || || |||||||||||||| ||| Sbjct 7763 TTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATCCCCTCTTTATCCTGAATTTTT 7704 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| || | || ||||||| ||| || ||||| || ||| Sbjct 7703 GTCTTCACATTCTCAATGGTGTCAGAGGCCTCAACCTCTAATGTTATGGTCTTTCCCGTA 7644 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || |||||||||||||||||||| Sbjct 7643 AGCGTTTTTACAAATATCTGCAT 7621 >seq1455 Length=44427 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | || ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 401 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 460 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || |||| || || | || ||||| || || || |||||||||||||| Sbjct 461 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTACCAGTAAGA 520 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| Sbjct 521 GTTTTCACGAAAATCTGCAT 540 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | || ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 93 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 152 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || |||| || || | || ||||| || || || ||||| || ||||| Sbjct 153 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 212 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 213 GTCTTCACGAATATCTGCAT 232 >seq7835 Length=5652 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | || ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 4216 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4275 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || |||| || || | || ||||| || || || ||||| || ||||| Sbjct 4276 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4335 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 4336 GTCTTCACGAATATCTGCAT 4355 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | || ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 4524 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4583 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || |||| || || | || ||||| || || || ||||| || ||||| Sbjct 4584 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4643 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 4644 GTCTTGACGAATATCTGCAT 4663 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | || ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 4832 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4891 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || |||| || || | || ||||| || || || ||||| || ||||| Sbjct 4892 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4951 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 4952 GTCTTCACGAATATCTGCAT 4971 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | || ||||| ||||| ||||| ||||| || ||||| || ||| Sbjct 5140 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 5199 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || |||| || || | || ||||| || || || ||||| || ||||| Sbjct 5200 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 5259 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || ||||||||||| Sbjct 5260 GTCTTCACGAATATCTGCAT 5279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151123491038580