Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1455 111 1e-19 seq7835 105 6e-18 seq2226 86.0 6e-12 >seq1455 Length=44427 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || |||||||||||||||||| || |||||||| | |||||| || || | Sbjct 405 CAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTCA 464 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||||| ||||| || | |||||||| || ||||||||||||| Sbjct 465 CGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTACCAGTAAGAGTTT 524 Query 94992 TCACAAAGATCTGCAT 95007 |||| || |||||||| Sbjct 525 TCACGAAAATCTGCAT 540 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || |||||||||||||||||| || |||||||| | |||||| || || | Sbjct 97 CAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTCA 156 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||||| ||||| || | |||||||| ||||| ||||| || | Sbjct 157 CGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGCGTCT 216 Query 94992 TCACAAAGATCTGCATGC 95009 |||| || |||||||||| Sbjct 217 TCACGAATATCTGCATGC 234 >seq7835 Length=5652 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || |||||||||||||||||| || |||||||| | |||||| || || | Sbjct 4220 CAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTCA 4279 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||||| ||||| || | |||||||| ||||| ||||| || | Sbjct 4280 CGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGCGTCT 4339 Query 94992 TCACAAAGATCTGCATGC 95009 |||| || |||||||||| Sbjct 4340 TCACGAATATCTGCATGC 4357 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || |||||||||||||||||| || |||||||| | |||||| || || | Sbjct 4836 CAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTCA 4895 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||||| ||||| || | |||||||| ||||| ||||| || | Sbjct 4896 CGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGCGTCT 4955 Query 94992 TCACAAAGATCTGCATGC 95009 |||| || |||||||||| Sbjct 4956 TCACGAATATCTGCATGC 4973 Score = 105 bits (116), Expect = 6e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || |||||||||||||||||| || |||||||| | |||||| || || | Sbjct 5144 CAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTCA 5203 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||||| ||||| || | |||||||| ||||| ||||| || | Sbjct 5204 CGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGCGTCT 5263 Query 94992 TCACAAAGATCTGCATGC 95009 |||| || |||||||||| Sbjct 5264 TCACGAATATCTGCATGC 5281 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || |||||||||||||||||| || |||||||| | |||||| || || | Sbjct 4528 CAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTCA 4587 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||||| ||||| || | |||||||| ||||| ||||| || | Sbjct 4588 CGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGCGTCT 4647 Query 94992 TCACAAAGATCTGCATGC 95009 | || || |||||||||| Sbjct 4648 TGACGAATATCTGCATGC 4665 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || |||||||||||||||||| || |||||||| | |||||| || || | Sbjct 5452 CAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCTTTCA 5511 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || | | ||||||| ||||| || | |||||||| ||||| ||||| || | Sbjct 5512 CGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGCGTCT 5571 Query 94992 TCACAAA 94998 |||| || Sbjct 5572 TCACGAA 5578 >seq2226 Length=30398 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||||| | ||||||||| ||||| ||||| |||||||| | || || || || || Sbjct 22480 AAGATTAGACGTTGCTGATCGGGAGGTATACCCTCTTTGTCCTGTATCTTCGCTTTAACA 22421 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 ||| || || | || || |||| |||||||| |||||||||||||| ||| Sbjct 22420 TTTTCGATGGTATCCGATGCCTCAACCTCAAGAGTGATGGTCTTTCCAGTAAGAGTCTTC 22361 Query 94994 ACAAAGATCTGCATG 95008 ||||| || |||||| Sbjct 22360 ACAAAAATTTGCATG 22346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448186776168600