Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6846 185 1e-42 seq3508 185 1e-42 seq218 172 9e-39 seq5563 140 5e-29 seq171 131 3e-26 seq813 122 1e-23 seq8160 100 4e-17 seq830 91.5 2e-14 seq3473 84.2 3e-12 seq5282 80.6 4e-11 >seq6846 Length=7219 Score = 185 bits (204), Expect = 1e-42 Identities = 201/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | || ||||| |||||||| || ||||| ||||| ||||| Sbjct 5609 GCCAAACGCCATCGCAAAGTGCTCCGAGACAACATCCAGGGGATCACTAAGCCGGCTATT 5668 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||||||||||||||| || ||| |||||||| || |||||||||| | | Sbjct 5669 CGACGTCTGGCTCGTCGTGGTGGAGTGAAACGTATCTCTGGACTGATCTATGAAGAAACT 5728 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | |||||| ||| ||| ||| ||||| || ||| ||| Sbjct 5729 CGTGGAGTTCTGAAGGTTTTCCTCGAGAACGTCATCAGAGATGCCGTCACCTACTGTGAG 5788 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | || || || || |||||||| |||| || || | ||||||||||| Sbjct 5789 CATGCGAAGAGAAAAACGGTGACGGCCATGGATGTCGTGTACGCGCTCAAACGTCAAGGA 5848 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || || || ||| | ||| Sbjct 5849 CGTACGCTGTACGGCTTCGGAGGATAA 5875 >seq3508 Length=18377 Score = 185 bits (204), Expect = 1e-42 Identities = 201/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | || ||||| |||||||| |||||||| ||||| ||||| Sbjct 678 GCCAAACGCCATCGCAAAGTGCTCCGAGACAACATCCAGGGAATCACTAAGCCGGCTATT 737 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||||||||||||||| || || |||||||| || |||||||||| | | Sbjct 738 CGACGTCTGGCTCGTCGTGGTGGAGTGAAACGCATCTCTGGACTGATCTATGAAGAAACT 797 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | |||||| ||| ||| ||| ||||| || ||| ||| Sbjct 798 CGTGGAGTTCTGAAGGTTTTCCTCGAGAACGTCATCAGAGATGCCGTCACCTACTGTGAG 857 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || || | || || || || |||||||| |||| || || | ||||||||||| Sbjct 858 CATGCGAAGAGAAAAACGGTGACGGCCATGGATGTCGTGTACGCGCTCAAACGTCAAGGA 917 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || || || ||| | ||| Sbjct 918 CGTACGCTGTACGGCTTCGGAGGATAA 944 >seq218 Length=125902 Score = 172 bits (190), Expect = 9e-39 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||||||||||||||| || || |||||||| |||||||||||||| || Sbjct 49879 GACAACATCCAAGGAATCACCAAGCCTGCAATTCGTCGTCTTGCTCGTCGTGGTGGTGTG 49938 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| ||| || ||||||| || | ||| | || | || | |||||| || Sbjct 49939 AAGCGTATCTCAGGACTGATCTATGAGGAAACTCGCGGCGTCCTCAAAGTTTTCCTCGAG 49998 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||||| |||||| || ||| ||||| || || | ||||| || || || Sbjct 49999 AACGTTATCAGAGATGCTGTCACCTACTGTGAGCATGCGAAGAGAAAGACAGTGACGGCC 50058 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| ||||||| || | ||||||||||| |||| | | || ||||| || Sbjct 50059 ATGGATGTCGTCTACGCTCTCAAACGTCAAGGACGTACGCTGTACGGTTTCGG 50111 >seq5563 Length=10220 Score = 140 bits (154), Expect = 5e-29 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | || |||| |||||||| || |||||||| || ||||| Sbjct 9223 GCGAAACGCCATCGCAAAGTGCTCAGAGACAACATCCAGGGCATCACCAAACCGGCTATT 9282 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || || ||||||||||| || || || |||||||| || |||| || || | Sbjct 9283 CGTCGCCTCGCCCGTCGTGGTGGTGTAAAACGCATCTCTGGACTGATCTACGAGGAAACG 9342 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| || || | ||| ||| || ||| ||| Sbjct 9343 CGTGGAGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGTGACGCTGTCACCTACTGCGAA 9402 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | |||||||||||| | ||||| |||| || || | || || ||||| Sbjct 9403 CACGCTAAGAGAAAGACTGTCACCGCAATGGACGTCGTGTACGCCCTCAAGCGCCAAGGA 9462 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | | || || || || Sbjct 9463 CGCACGCTGTACGGCTTCGG 9482 >seq171 Length=135762 Score = 131 bits (144), Expect = 3e-26 Identities = 175/242 (72%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | || | ||||||||||| || |||||||||||||| || Sbjct 115847 GCGAAACGCCATCGCAAAGTGCTCAGGGATAACATCCAGGGCATCACCAAGCCAGCCATT 115906 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||| |||||| |||| || ||| || || ||||| || |||| || || | Sbjct 115907 CGTCGCTTGGCCCGTCGTAGTGGTGTGAAGTGTATCCCTGGACTGATCTACGAGGAAACG 115966 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | ||||| ||| | || | ||| | | || |||| ||| Sbjct 115967 CGTGGAGTTCTGAAGGTGTTCCTGGAGAATATGATTCGTGACGTTGTCACCTATTGCGAA 116026 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| ||||| ||||||| ||||||| || | || || ||||| Sbjct 116027 CACGCCAAGAG-AAGACCATCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAAGGA 116085 Query 16673 CG 16674 || Sbjct 116086 CG 116087 >seq813 Length=67497 Score = 122 bits (134), Expect = 1e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || || ||||||| | || |||| |||||||| || |||||||| | ||||| Sbjct 17527 GCGAAACGCCATCGCAAAGTGCTCAGAGACAACATCCAGGGCATCACCAAACTGGCTATT 17468 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || |||||||||||||| || || || || ||||| || |||| || || | Sbjct 17467 CGTCGCCTCGCTCGTCGTGGTGGTGTAAAACGCATCCCTGGACTGATCTACGAGGAAACG 17408 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | ||||| ||| || || | ||| ||| || ||| ||| Sbjct 17407 CGTGGAGTGCTGAAGGTGTTCCTGGAGAATGTGATTCGTGAAGCTGTCACCTACTGCGAA 17348 Query 16613 CACGCTAAACGTAAGACTGTCACCTCC 16639 |||||||| | |||||||||||| || Sbjct 17347 CACGCTAAGAGAAAGACTGTCACCGCC 17321 >seq8160 Length=5235 Score = 100 bits (110), Expect = 4e-17 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 16469 CAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTC 16528 |||||||| ||||||| ||| || ||||||||||||||||| | |||||| | ||| || Sbjct 3372 CAAGGAATTACCAAGCAAGCGATTCGTCGTCTGGCTCGTCGCGCTGGAGTGATGCGCTTC 3431 Query 16529 TCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATC 16588 || ||| | || ||||| || ||||| || || | ||| | |||||| ||| ||| || Sbjct 3432 TCAGGACTAGTATATGACGAAATTCGGGAAGTACTAAAGGTGTTCCTCGAGAGCGTGATA 3491 Query 16589 CATGATGC 16596 | ||||| Sbjct 3492 CGAGATGC 3499 >seq830 Length=66647 Score = 91.5 bits (100), Expect = 2e-14 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| |||||||| | ||||||||||| || || || | ||| || || ||||||| | Sbjct 55336 GAGAGAACATCCAGGCCATCACCAAGCCGGCAATTCGCCATCTAGCGCGACGTGGTGATG 55277 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 | | |||| |||||| |||| |||| || ||||||| || ||| ||||| | ||||| Sbjct 55276 TGAGGCGTATCTCTGAATTGATCTACGAGGAGATTCATGGAGTTCTGAAGGTGTTCCT 55219 >seq3473 Length=18594 Score = 84.2 bits (92), Expect = 3e-12 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| ||||| |||| || ||| ||||||||| || Sbjct 4077 GACAACATCCAGGGCATCACCAAGCCTGCTATTCGTCACATGTCTCATCGTGGTGGTGTG 4018 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||| ||| |||| || |||| || |||| Sbjct 4017 AAGCGTATCTTTGGACTGATCTACGAGGAGA 3987 >seq5282 Length=10970 Score = 80.6 bits (88), Expect = 4e-11 Identities = 108/148 (73%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAA-CATCCAAGGAATCACCAAGCCAGCTA 16490 |||||| || ||||| | | | ||||| | | ||| ||||| |||||||||| || | Sbjct 4270 CGCTAAACGCCATCGTAAAG-TGTTCGAAAACAGCATGCAAGGGATCACCAAGCAGGCAA 4328 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | ||||||||||| |||| | || ||| | || |||| || | | |||||||| | Sbjct 4329 TTTGTCGTCTGGCTTGTCGCGCTGTAGTGATGCTCATCTCAGGGCTTGCATATGAAGAAA 4388 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAA 16578 |||| || ||| ||||| | ||| |||| Sbjct 4389 TTCGGGAAGTTGTGAAGGTGTTCGTCAA 4416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79058161889055