Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10626 122 6e-23 seq41 89.7 3e-13 seq2354 84.2 1e-11 >seq10626 Length=2977 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 2357 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 2416 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| || |||| |||||| Sbjct 2417 TAATCCATTCATGCGCGTCAGTAGTTAGCTGACGA 2451 >seq41 Length=199050 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||||| | || ||||||||| ||||||| |||| Sbjct 36306 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCTTTACAGTACTTGTTTGCTATCGAATTCGC 36365 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 36366 GTTCGTATTTAGCCTTA 36382 >seq2354 Length=28830 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCG-GTCTCG 20005 |||||||||||||||||||| |||||||| |||| |||||||| ||||||| | ||| Sbjct 25038 CTCTCTCTTCAAAGTTCTTTGCAACTTTCGTTCACACTACTTGTTTGCTATCGAATTTCG 25097 Query 20006 CGGTAATATTTAGCCTTA 20023 || | |||||||||||| Sbjct 25098 CGTTCGTATTTAGCCTTA 25115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334871128780685