Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq616 140 4e-28 >seq616 Length=79441 Score = 140 bits (154), Expect = 4e-28 Identities = 295/440 (67%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 63172 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63231 |||||| | |||||| || || | || || || | |||| || ||||| || || || Sbjct 56672 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTGCCGCC 56613 Query 63232 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 63291 ||||| | ||||| ||| || || || || || | |||||||||| | |||||||| Sbjct 56612 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 56553 Query 63292 TGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 63351 ||| || || || || || | ||| |||| ||||| ||| | | ||| Sbjct 56552 TGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTCAAACC 56493 Query 63352 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 63411 ||||| || || | || || |||| || ||| | || | ||||| || || ||| | Sbjct 56492 GATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAATACCCGC 56433 Query 63412 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 63471 || ||| || |||| | | |||||||| || | ||| | | ||||| Sbjct 56432 AATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATAGCGTTCC 56373 Query 63472 CGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63531 |||||||| | || || || || ||||| || | |||| | |||||||||||| Sbjct 56372 AGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAGATTGTACGT 56313 Query 63532 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63591 || ||||||| || |||||| |||||| || || || || ||||| | |||||| Sbjct 56312 TTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATAAGCATGTG 56253 Query 63592 CTGAGGTCTTTCAACGATCT 63611 || ||||||||| ||| || Sbjct 56252 TTGTGGTCTTTCAGCGACCT 56233 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62980 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGG 63039 |||||||||| ||||||| || ||||| || || |||||||||||||||| ||| Sbjct 56924 TGTATACAATTCGTCGAACTTCTCCCCCCAGCAATCATCGAGTCCAGGACATTCATGCGG 56865 Query 63040 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63099 |||||| | ||||| || |||| || || | ||||| || || || |||||||| Sbjct 56864 ACACATTAGAGACCATTCCATGTCACGCTCTACCCTCTTCATGAAAAGGTCCGGAATCCA 56805 Query 63100 AAGAGCTATAAATAGATC 63117 | ||| ||| ||||| Sbjct 56804 CAAAGCATAAAACAGATC 56787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633484403346000