Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq12247 102 2e-16 seq16839 100 6e-16 seq16373 100 6e-16 seq3308 100 6e-16 seq8650 96.9 7e-15 seq13713 91.5 3e-13 seq17413 87.8 4e-12 seq1037 87.8 4e-12 seq17524 84.2 4e-11 >seq12247 Length=2064 Score = 102 bits (112), Expect = 2e-16 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||||||||||||||||||||||| | ||||||||||||| | |||| |||||||| Sbjct 1141 TAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGA 1200 Query 142562 GCCCCACATCGGGC 142575 ||||| |||||||| Sbjct 1201 GCCCCGCATCGGGC 1214 Score = 96.9 bits (106), Expect = 7e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||||| Sbjct 816 CCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGCC 875 Query 142565 CCACATCGGGC 142575 || |||||||| Sbjct 876 CCGCATCGGGC 886 >seq16839 Length=805 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 605 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 546 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 545 CCCCGCATCGGGC 533 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 770 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 711 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 710 CCCCGCATCGGGC 698 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||| ||| | ||||||||||||| | |||| ||||||||| Sbjct 138 AGCCCGGTTAGCTCAGTCGGTAAAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 79 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 78 CCCCTCATCGGGC 66 >seq16373 Length=902 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 160 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 219 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 220 CCCCGCATCGGGC 232 >seq3308 Length=19720 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 1031 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 1090 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 1091 CCCCGCATCGGGC 1103 >seq8650 Length=4638 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||| |||||||||||||||||||||| | ||||||||||||| | |||| ||||||||| Sbjct 1751 AGCGCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAG 1692 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 1691 CCCCGCATCGGGC 1679 >seq13713 Length=1553 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||| |||||| | ||||||||||||| || ||| ||||||||| Sbjct 134 AGCCCGGTTAGCTCAGTCGCTAGAGCACCAGACTCTTAATCTGGTTGTCACGGGTTCGAG 75 Query 142563 CCCCACATCGGGC 142575 || | |||||||| Sbjct 74 CCTCGCATCGGGC 62 >seq17413 Length=693 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||| | ||||||||||||| | || ||||||||| Sbjct 664 AGCCCAGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTTACGGGTTCGAG 605 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 604 CCCCGCATCGGGC 592 >seq1037 Length=57941 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||| |||||||| | |||||||| |||| | ||| ||||||||| Sbjct 57447 AGCCCGGTTAGCTCAGTTGGTAGAGCACCAGACTCTTGATCTGGCTGTCACGGGTTCGAG 57506 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 57507 CCCCGCATCGGGC 57519 >seq17524 Length=671 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||| ||||| | ||||||||||||| | |||| || |||||| Sbjct 244 AGCCCTGTTAGCTCAGTCGGCAGAGCACCAGACTCTTAATCTGGCTGTCGCGGCTTCGAG 303 Query 142563 CCCCACATCGG 142573 |||| |||||| Sbjct 304 CCCCGCATCGG 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027591392722035