Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2276 120 7e-22 seq7835 96.9 8e-15 seq1455 93.3 1e-13 >seq2276 Length=29858 Score = 120 bits (132), Expect = 7e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||| ||||| | ||| ||| | ||||||||| || ||||||||||| ||| Sbjct 6859 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 6800 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||||||||| |||| |||| || ||| || ||||| |||||||| || || || Sbjct 6799 GCCTTCACGTTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTT 6740 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || || || || || || |||||| Sbjct 6739 AGCGTTTTCACAAAGATTTGCATT 6716 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||| ||||| | ||| ||| | ||||||||| || ||||||||||| ||| Sbjct 6254 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 6195 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| ||||| |||| |||| || ||| || ||||| |||||||| || || || Sbjct 6194 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 6135 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || || || || || ||||| Sbjct 6134 AGCGTTTTCACAAAGATTTGCAT 6112 Score = 111 bits (122), Expect = 4e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||| || || | ||| ||| | ||||||||| || ||||||||||| ||| Sbjct 7461 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 7402 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| ||||| |||| |||| || ||| || ||||| |||||||| || || || Sbjct 7401 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 7342 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 || || || || || || |||||| Sbjct 7341 AGCGTTTTCACAAAGATTTGCATT 7318 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||| |||| | ||||||| ||||||||||||||||||||| || || Sbjct 6555 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 6496 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || || | ||| | ||| |||||||| || || |||||||| ||| Sbjct 6495 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 6436 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || || |||||| Sbjct 6435 AGAGTTTTCACAAAGATTTGCATT 6412 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || |||||||| |||| | ||||||| ||||||||||||||||||||| || || Sbjct 7160 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 7101 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || || || || || || | ||| | ||| |||||||| || || |||||||| ||| Sbjct 7100 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 7041 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 ||||| || || || || |||||| Sbjct 7040 AGAGTTTTCACAAAGATTTGCATT 7017 >seq7835 Length=5652 Score = 96.9 bits (106), Expect = 8e-15 Identities = 108/143 (76%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || || ||| ||||| ||||| ||||| || || ||||| Sbjct 4524 CCAGCAAAGATCAGTCGTTGCTGA---TCTGGAGGAATTCCCTCTTTGTCTTGAATTTTG 4580 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| ||||| | || | || || ||||| ||||| ||||| || || Sbjct 4581 GCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTA 4640 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||||||||| Sbjct 4641 AGCGTCTTGACGAATATCTGCAT 4663 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || || ||| ||||| ||||| ||||| || || ||||| Sbjct 4216 CCAGCAAAGATCAGTCGTTGCTGA---TCTGGAGGAATTCCCTCTTTGTCTTGAATTTTG 4272 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| ||||| | || | || || ||||| ||||| ||||| || || Sbjct 4273 GCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTA 4332 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||||||||| Sbjct 4333 AGCGTCTTCACGAATATCTGCAT 4355 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || || ||| ||||| ||||| ||||| || || ||||| Sbjct 4832 CCAGCAAAGATCAGTCGTTGCTGA---TCTGGAGGAATTCCCTCTTTGTCTTGAATTTTG 4888 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| ||||| | || | || || ||||| ||||| ||||| || || Sbjct 4889 GCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTA 4948 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||||||||| Sbjct 4949 AGCGTCTTCACGAATATCTGCAT 4971 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || || ||| ||||| ||||| ||||| || || ||||| Sbjct 5140 CCAGCAAAGATCAGTCGTTGCTGA---TCTGGAGGAATTCCCTCTTTGTCTTGAATTTTG 5196 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| ||||| | || | || || ||||| ||||| ||||| || || Sbjct 5197 GCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTA 5256 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||||||||| Sbjct 5257 AGCGTCTTCACGAATATCTGCAT 5279 >seq1455 Length=44427 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/143 (75%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || || ||| ||||| ||||| ||||| || || ||||| Sbjct 93 CCAGCAAAGATCAGTCGTTGCTGA---TCTGGAGGAATTCCCTCTTTGTCTTGAATTTTG 149 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| ||||| | || | || || ||||| ||||| ||||| || || Sbjct 150 GCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTA 209 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||||||||| Sbjct 210 AGCGTCTTCACGAATATCTGCAT 232 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 || || |||||||| || || ||| ||||| ||||| ||||| || || ||||| Sbjct 401 CCAGCAAAGATCAGTCGTTGCTGA---TCTGGAGGAATTCCCTCTTTGTCTTGAATTTTG 457 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| ||||| | || | || || ||||| ||||| ||||| || || Sbjct 458 GCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTACCAGTA 517 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| |||||||| Sbjct 518 AGAGTTTTCACGAAAATCTGCAT 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179372744609530