Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5456 84.2 5e-11 >seq5456 Length=10515 Score = 84.2 bits (92), Expect = 5e-11 Identities = 129/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 30973 CCACGAATGTTCCTTGCGAAT-TGCTTCTTCTTCCTCGGGTGTGATCTCGTTTTCGATAC 31031 ||| | || |||||||||||| ||| |||||||| |||||||||| ||||||| |||| Sbjct 1169 CCATGCATTTTCCTTGCGAATCTGC-TCTTCTTCTTCGGGTGTGAAATCGTTTTTGATAT 1227 Query 31032 CGAACACTTTTCGAATCTCTTCCGGAGtttttccttttattttttCAGCGATAGCTTGAC 31091 |||| || || || ||||| ||||| ||||| || | | |||| | || || Sbjct 1228 TGAACGTACGACGGATTTCCTCCGGCGTTTTCCCTTTGATCATATTGGCGACCGTTTTAC 1287 Query 31092 ATAGAACATCAAGCATACTCTTTATGTTCAAGA-AATTCGCTCCTTGAATCAGTTCGAA 31149 | |||||||||| | |||||| || ||| |||| ||| | | || | |||||| Sbjct 1288 AAGTGACATCAAGCAGTCCCTTTAT-ATCGAGATAATTGGCTGCAAGGATTAATTCGAA 1345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102616675337250