Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7835 87.8 2e-12 seq1455 87.8 2e-12 >seq7835 Length=5652 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || ||||| ||||| || ||||||||| |||| |||||||| | Sbjct 4355 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4296 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||||| | ||||||||||||||||| | || || Sbjct 4295 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 4237 Query 38363 ACAGCGGCTCAT 38374 || || || || Sbjct 4236 GCAACGACTGAT 4225 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || ||||| ||||| || ||||||||| |||| |||||||| | Sbjct 4663 ATGCAGATATTCGTCAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4604 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||||| | ||||||||||||||||| | || || Sbjct 4603 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 4545 Query 38363 ACAGCGGCTCAT 38374 || || || || Sbjct 4544 GCAACGACTGAT 4533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || ||||| ||||| || ||||||||| |||| |||||||| | Sbjct 4971 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4912 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||||| | ||||||||||||||||| | || || Sbjct 4911 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 4853 Query 38363 ACAGCGGCTCAT 38374 || || || || Sbjct 4852 GCAACGACTGAT 4841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || ||||| ||||| || ||||||||| |||| |||||||| | Sbjct 5279 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 5220 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||||| | ||||||||||||||||| | || || Sbjct 5219 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 5161 Query 38363 ACAGCGGCTCAT 38374 || || || || Sbjct 5160 GCAACGACTGAT 5149 >seq1455 Length=44427 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| |||||||| || ||||| ||||| || ||||||||| |||| |||||||| | Sbjct 232 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 173 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| ||||| | ||||||||||||||||| | || || Sbjct 172 GACACGATAGAGAACG-TGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 114 Query 38363 ACAGCGGCTCAT 38374 || || || || Sbjct 113 GCAACGACTGAT 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500056290998400