Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2032 134 5e-26 seq3053 84.2 9e-11 >seq2032 Length=33350 Score = 134 bits (148), Expect = 5e-26 Identities = 197/278 (71%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 || || || ||||| || |||||||| || ||||| | || || ||||| ||||| ||| Sbjct 5477 GACGCCGTCATTACCGTCCCCGCTTACTTTAATGACTCTCAGCGCCAAGCCACTAAGGAT 5418 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||||| ||| || ||| | ||||| |||||||| || || || || ||||| |||||| Sbjct 5417 GCAGGAGCTATCGCCGGTCTTAATGTCCTTCGAATCATAAACGAGCCAACAGCTGCTGCT 5358 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | |||||||| || | || || | || | || | |||| || | |||||||| Sbjct 5357 ATCGCATATGGTCTCGACAAG---AAGGGTACCGGGGAGAGAAATGTTCTCATATTTGAT 5301 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 |||| || ||||| ||| || | || | ||||||||||| | || ||||| Sbjct 5300 CTTGGAGGTGGAACATTTGACGTGTCCATCCTAACCATTGAAGATGGCATTTTCGAAGTG 5241 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 ||| | || ||| || || ||||| ||||| || || Sbjct 5240 AAGTCTACTGCTGGAGACACGCATCTTGGAGGGGAGGA 5203 Score = 100 bits (110), Expect = 1e-15 Identities = 246/370 (66%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTTCT 451957 || ||||| ||||| |||||||| || || ||||||||| | ||| | | ||||| | Sbjct 4901 GACATTGTACTTGTTGGAGGTTCGACGCGTATTCCTAAAGTGCAAAAGCTTCTGTCTGAT 4842 Query 451958 TATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGT 452017 ||| |||||| |||| || | || || |||||||| || || || ||| Sbjct 4841 CTGTTTTCTGGAAAAGAACTGAACAAATCTATCAACCCAGATGAAGCAGTCGCTTACGGT 4782 Query 452018 GCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGA---TGAAAAATTAGGAGATATT 452074 ||||| || || || || || || |||| ||| | |||| | |||| || Sbjct 4781 GCTGCGGTGCAGGCCGCCATCCTTTCAGGC---GATAAATCTGAAGCGGTCCAAGATCTT 4725 Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 || | | ||||| | || || || ||||| |||| || ||||| || | |||||| Sbjct 4724 CTACTTCTTGATGTCGCTCCACTCTCGCTTGGTATTGAGACTGCTGGAGGTGTTATGACT 4665 Query 452135 AATTTAATTAAACGAGGAACTTCT--ATTCCTTGTAAAAAGAGTCAAACATTTAGTACAG 452192 ||| ||||| ||||||| | || ||| || | || ||||| || | ||| Sbjct 4664 GCTTTGATTAA--GAGGAACACCACAATCCCTACGAAGACAAGCCAAACGTTCACGACAT 4607 Query 452193 CAAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACAC 452252 || ||||| ||||| ||| || || || |||||||||||||| || ||||| Sbjct 4606 ACTCCGACAACCAGCCAGGGGTATTGATCCAGGTCTTTGAAGGAGAACGAGCGATGACGA 4547 Query 452253 GAGATAATAA 452262 ||| ||||| Sbjct 4546 AAGACAATAA 4537 >seq3053 Length=21624 Score = 84.2 bits (92), Expect = 9e-11 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 || || || ||||||||||| ||||||||||| || || |||||| | ||||||||||| Sbjct 13668 GCTACAAAGGATGCAGGACAAATTGCTGGTTTGAACGTCCTTCGAGTGATTAATGAACCC 13727 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAA 451459 || || || ||||| || ||||| || ||| || Sbjct 13728 ACTGCTGCAGCTCTTGCTTATGG-CTTGGATAA 13759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975246675622580