Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2032 208 6e-48 seq2124 107 1e-17 >seq2032 Length=33350 Score = 208 bits (230), Expect = 6e-48 Identities = 554/844 (66%), Gaps = 2/844 (0%) Strand=Plus/Plus Query 517465 AGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACC 517524 ||| ||||| ||||| || | ||| | | ||||||| ||| || || || || | ||| Sbjct 4635 AGGGATTGTGGTGTTCCTCTTAATCAAAGCAGTCATAACACCTCCAGCAGTCTCAATACC 4694 Query 517525 AAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACC 517584 ||| || || |||| |||||||| || | || || ||| | |||| | | || Sbjct 4695 AAGCGAGAGTGGAGCGACATCAAGAAGTAGAAGATCTTGGACCGCTTCAGATTTATCGCC 4754 Query 517585 AACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGT 517644 ||| || || || || | |||||||| || || || |||||||| || || | || Sbjct 4755 TGAAAGGATGGCGGCCTGCACCGCAGCACCGTAAGCGACTGCTTCATCTGGGTTGATAGA 4814 Query 517645 TTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACG 517704 || || |||| ||| ||| || | || || ||||| | | || ||||||||||| Sbjct 4815 TTTGTTCAGTTCTTTTCCAGAAAACAGATCAGACAGAAGCTTTTGCACTTTAGGAATACG 4874 Query 517705 AGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAA 517764 | || |||||||| | |||||| || | |||||| || |||| ||| | |||| Sbjct 4875 CGTCGAACCTCCAACAAGTACAATGTCGTTCACCTGACTCTTGTCCATTTTGGCATCCCT 4934 Query 517765 TAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAA 517824 | | || ||||| || || | || | || | || | |||||| || || || Sbjct 4935 AAGAGACTTCTCAACAGGGTCCATGGTCGACCGGAAGAGATCGGCACAAAGCTCCTCAAA 4994 Query 517825 TTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 || | |||| | | ||||||| ||||| || | || |||| ||||| Sbjct 4995 GCGGGCACGGGTAATGTTCGTGTAGAAATCAATGCCTTCAAAGAGTGAGTCAATCTCAAT 5054 Query 517885 CGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCT 517944 | || || | || || || |||| ||||||||| ||||| || || || | || | Sbjct 5055 GGAAGCCTGCGATGACGATGAAAGTGTACGTTTAGCGCGTTCGCAAGCAGTACGAAGGCG 5114 Query 517945 TCGTAAGGCTTTTGC-TGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAA 518003 || | || | | | || || | ||| | || | ||||| ||||| ||| | | Sbjct 5115 TCTGAGCGCACGAGGATTAGTGTTT-AGGTCTTTCTTGTGTTTTCGTTTGAACTCTGCCA 5173 Query 518004 CACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACG 518063 || | | || | || || || || || || ||||| | | || | ||| | | Sbjct 5174 CAAAGTGGTTGACCATGCGGTTGTCGAAGTCCTCCCCTCCAAGATGCGTGTCTCCAGCAG 5233 Query 518064 TAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCAC 518123 ||| | |||| ||||| |||||||||| | | | | || ||| ||||||| Sbjct 5234 TAGACTTCACTTCGAAAATGCCATCTTCAATGGTTAGGATGGACACGTCAAATGTTCCAC 5293 Query 518124 CACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 518183 | || | |||||| || || ||||| | || | || || || |||||||| | Sbjct 5294 CTCCAAGATCAAATATGAGAACATTTCTCTCCCCGGTACCCTTCTTGTCGAGACCATATG 5353 Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243 | | ||||||||| ||||| || || || |||| | ||||||||||| || || || Sbjct 5354 CGATAGCAGCAGCTGTTGGCTCGTTTATGATTCGAAGGACATTAAGACCGGCGATAGCTC 5413 Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303 ||||||| ||||||||||| | || || || ||||| || || || || ||||| |||| Sbjct 5414 CTGCATCCTTAGTGGCTTGGCGCTGAGAGTCATTAAAGTAAGCGGGGACGGTAATGACGG 5473 Query 518304 CATC 518307 | || Sbjct 5474 CGTC 5477 >seq2124 Length=31866 Score = 107 bits (118), Expect = 1e-17 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || |||||||||||||| || | ||||||||||| || || || || |||| || || Sbjct 25667 TTCTTATCAAGACCATATGCGATGGCAGCAGCAGTAGGCTCGTTGATTATTCGCACGACG 25608 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| | || ||||| || |||||||| | ||| | |||||| || || Sbjct 25607 TTTAGGCCAGCAATCGTCCCAGCATCCTTTGTGGCTTGACGTTGCGCATCGTTGAAGTAC 25548 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 || || ||||| | ||| |||| | || || || |||| ||| Sbjct 25547 GCTGGGACAGTGACAACAGCATGCTTCACCTCCTTTCCAAGATA 25504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779897669916310