Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2032 260 2e-64 seq2124 143 3e-29 seq616 132 6e-26 >seq2032 Length=33350 Score = 260 bits (288), Expect = 2e-64 Identities = 574/855 (67%), Gaps = 8/855 (1%) Strand=Plus/Plus Query 6888 TCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTT 6947 |||| | || || || || || ||| ||| | | ||||||| ||| || ||| | Sbjct 4628 TCTTCGTAGGGATTGTGGTGTTCCTCTTAATCAAAGCAGTCATAACACCTCCAGCAGTCT 4687 Query 6948 CGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCC 7007 | | ||||| || || || | || || | |||| || ||||| || | ||| Sbjct 4688 CAATACCAAGCGAGAGTGGAGCGACATCAAGAAGTAGAAGATCTTGGACCGCTTCAGATT 4747 Query 7008 CTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGT 7067 || || | | ||||||||| || |||| || ||||| ||||| || ||||| |||| Sbjct 4748 TATCGCCTGAAAGGATGGCGGCCTGCACCGCAGCACCGTAAGCGACTGCTTCATCTGGGT 4807 Query 7068 TAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCG 7127 | || | ||| ||||||||||| || ||| ||| || | | | ||| | ||| | Sbjct 4808 TGATAGATTTGTTCAGTTCTTTTCCAGAAAACAGATCAGACAGAAGCTTTTGCACTTTAG 4867 Query 7128 GGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTG 7187 | || || ||||| || || || | || || || ||||| | || || || || | Sbjct 4868 GAATACGCGTCGAACCTCCAACAAGTACAATGTCGTTCACCTGACTCTTGTCCATTTTGG 4927 Query 7188 AGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTT 7247 || | ||| | || || ||||| ||||| ||||| | || ||| || | Sbjct 4928 CATCCCTAAGAGACTTCTCAACAGGGTCCATGGTCGACCGGAAGAGATCGGCACAAAGCT 4987 Query 7248 CCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAA 7307 ||||||| || |||||||||||| || |||||||||| ||| || | | || |||| Sbjct 4988 CCTCAAAGCGGGCACGGGTAATGTTCGTGTAGAAATCAATGCCTTCAAAGAGTGAGTCAA 5047 Query 7308 TTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTC 7367 | ||||||| | || | | ||| || | || || || ||||| || || || || | Sbjct 5048 TCTCAATGGAAGCCTGCGATGACGATGAAAGTGTACGTTTAGCGCGTTCGCAAGCAGTAC 5107 Query 7368 GTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACT 7427 | | || | || ||||| || ||| | | |||||||| ||||| ||||| |||| Sbjct 5108 GAAGGCGTCTGAGCGCACGAGGATTAGTGTTTAGGTCTTTCTTGTGTTTTCGTTTGAACT 5167 Query 7428 CTTCAGAGAAGT-GTCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTAT 7484 || | |||| || || | | | | ||||| || || || || | || || | Sbjct 5168 CTGCCACAAAGTGGTTGACCATGCGGTT---GTCGAAGTCCTCCCCTCCAAGATGCGTGT 5224 Query 7485 CCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAA 7544 | || || || | || ||||| || || || |||||||| ||| | || || |||| Sbjct 5225 CTCCAGCAGTAGACTTCACTTCGAAAATGCCATCTTCAATGGTTAGGATGGACACGTCAA 5284 Query 7545 ACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGA 7604 | || ||||| || || ||||| ||||| || || | || || ||||| |||| Sbjct 5285 ATGTTCCACCTCCAAGATCAAATATGAGAACATTTCTCTCCCCGGTACCCTTCTTGTCGA 5344 Query 7605 GACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCA 7663 |||| || |||||||| || || ||||| || || || || |||| |||| || || || Sbjct 5345 GACCATATGCGATAGCAGCAGCTGTTGGCTCGTTTATGATTCGAAGGACA-TTAAGACCG 5403 Query 7664 GCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACC 7723 || |||| | | ||||| || || ||||| || || || || |||||||| || ||||| Sbjct 5404 GCGATAGCTCCTGCATCCTTAGTGGCTTGGCGCTGAGAGTCATTAAAGTAAGCGGGGACG 5463 Query 7724 GTTACGACCGCGTCC 7738 || | ||| |||||| Sbjct 5464 GTAATGACGGCGTCC 5478 >seq2124 Length=31866 Score = 143 bits (158), Expect = 3e-29 Identities = 173/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 |||||||| ||||| || ||||| || || || || || || || || || || | ||| Sbjct 25667 TTCTTATCAAGACCATATGCGATGGCAGCAGCAGTAGGCTCGTTGATTATTCGCACGAC- 25609 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||| ||||||||||| || | ||||| || || ||||| ||||||| |||||| ||||| Sbjct 25608 GTTTAGGCCAGCAATCGTCCCAGCATCCTTTGTGGCTTGACGTTGCGCATCGTTGAAGTA 25549 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 || ||||| || || || || | | | || | ||| || ||||| || ||||| || || Sbjct 25548 CGCTGGGACAGTGACAACAGCATGCTTCACCTCCTTTCCAAGATATGACTCCGCAATCTC 25489 Query 7774 TTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCG 7826 |||||||| || ||||| | || |||||||||| | || ||||||| Sbjct 25488 CTTCATTTTTCCCAGCACCATAGCCGAGATCTCTTCAGGGGTGAATTGTTTCG 25436 >seq616 Length=79441 Score = 132 bits (146), Expect = 6e-26 Identities = 296/440 (67%), Gaps = 7/440 (2%) Strand=Plus/Minus Query 105658 TCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTACG---ACGC 105714 |||| |||||| || |||||||| || | ||||| ||||| | ||| || | Sbjct 56677 TCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTG 56618 Query 105715 CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAATACCA 105774 || |||||| || |||| || || ||| || || ||||||||||||| | ||| Sbjct 56617 CCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCA 56558 Query 105775 TCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAACGTGT 105834 | |||||| || || || |||| ||| ||| | | || || | | || |||| Sbjct 56557 TTGGATGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTC 56498 Query 105835 AACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGTAAATA 105894 || || || || ||||| | ||| || | ||||| | || | ||||||||||||| Sbjct 56497 AAACCGATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAATA 56438 Query 105895 CCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTCTGGGT 105954 || | || ||| || | ||| | ||| ||||||||||| | ||| || | | Sbjct 56437 CCCGCAATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATAGC 56378 Query 105955 GTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGATAA--CGCTT 106012 || |||||||| |||| ||||||| ||||||| |||| | ||| ||| | | | || Sbjct 56377 GTTCCAGCATTAAACATTGTTGGTGATGCATGAGTGAA-ATACCGTTCACTCATTAGATT 56319 Query 106013 CGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGACGCGCATAT 106072 ||| ||||| | | ||| ||||| | ||||||||||| | || || |||||| Sbjct 56318 -GTACGTTTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATAA 56260 Query 106073 AGAGATATTGGGGTGTTTCA 106092 | | ||| ||| ||||| Sbjct 56259 GCATGTGTTGTGGTCTTTCA 56240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634984853753400