Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq616 82.4 9e-11 >seq616 Length=79441 Score = 82.4 bits (90), Expect = 9e-11 Identities = 284/440 (65%), Gaps = 5/440 (1%) Strand=Plus/Minus Query 106881 ACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---AC 106937 |||| | ||||| || ||||||||||| ||||||| ||| | | ||| ||| | Sbjct 56679 ACTCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTAT 56620 Query 106938 GCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATAC 106997 || |||||| || || || || || ||| ||||||| | |||||||| | | Sbjct 56619 TGCCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACC 56560 Query 106998 CATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGT 107057 ||| ||| || || || || | ||| || | |||| | | | ||| | || Sbjct 56559 CATTGGATGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGT 56500 Query 107058 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 107117 || || || || ||||| | ||| || ||| | ||||| | | | || || | || | Sbjct 56499 TCAAACCGATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAA 56440 Query 107118 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 107177 |||| || || ||||| | | | | || || || || | ||||| | | Sbjct 56439 TACCCGCAATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATA 56380 Query 107178 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC-TTGGGACATCTTG 107236 | || |||||||| || | ||||||| ||| ||| |||| ||||| || ||| Sbjct 56379 GCGTTCCAGCATTAAACATTGTTGGTGATGCATGAGTGAA-ATACCGTTCACTCATTAGA 56321 Query 107237 TCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATA 107296 | ||| || || | | | ||| || || || || || || |||| || || |||||| Sbjct 56320 TTGTACGTTTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATA 56261 Query 107297 AACATGTATTGGGGTGTTTC 107316 | ||||| ||| ||| |||| Sbjct 56260 AGCATGTGTTGTGGTCTTTC 56241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589843371347400