Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014-
09-24] 18,635 sequences; 253,242,791 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq7835 91.5 1e-13
seq1455 91.5 1e-13
>seq7835
Length=5652
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901
|| ||||| || ||||||||||| ||| | || | ||||| ||||| ||| || |
Sbjct 4216 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4275
Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961
|| ||| |||||| ||| ||||| || |||| ||| ||||| |||||||| ||
Sbjct 4276 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4335
Query 34962 GTCTTCACAAAGATCTGCAT 34981
|||||||| || ||||||||
Sbjct 4336 GTCTTCACGAATATCTGCAT 4355
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901
|| ||||| || ||||||||||| ||| | || | ||||| ||||| ||| || |
Sbjct 4832 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4891
Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961
|| ||| |||||| ||| ||||| || |||| ||| ||||| |||||||| ||
Sbjct 4892 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4951
Query 34962 GTCTTCACAAAGATCTGCAT 34981
|||||||| || ||||||||
Sbjct 4952 GTCTTCACGAATATCTGCAT 4971
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901
|| ||||| || ||||||||||| ||| | || | ||||| ||||| ||| || |
Sbjct 5140 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 5199
Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961
|| ||| |||||| ||| ||||| || |||| ||| ||||| |||||||| ||
Sbjct 5200 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 5259
Query 34962 GTCTTCACAAAGATCTGCAT 34981
|||||||| || ||||||||
Sbjct 5260 GTCTTCACGAATATCTGCAT 5279
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901
|| ||||| || ||||||||||| ||| | || | ||||| ||||| ||| || |
Sbjct 4524 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4583
Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961
|| ||| |||||| ||| ||||| || |||| ||| ||||| |||||||| ||
Sbjct 4584 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4643
Query 34962 GTCTTCACAAAGATCTGCAT 34981
||||| || || ||||||||
Sbjct 4644 GTCTTGACGAATATCTGCAT 4663
>seq1455
Length=44427
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901
|| ||||| || ||||||||||| ||| | || | ||||| ||||| ||| || |
Sbjct 93 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 152
Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961
|| ||| |||||| ||| ||||| || |||| ||| ||||| |||||||| ||
Sbjct 153 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 212
Query 34962 GTCTTCACAAAGATCTGCAT 34981
|||||||| || ||||||||
Sbjct 213 GTCTTCACGAATATCTGCAT 232
Score = 84.2 bits (92), Expect = 1e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901
|| ||||| || ||||||||||| ||| | || | ||||| ||||| ||| || |
Sbjct 401 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 460
Query 34902 TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGA 34961
|| ||| |||||| ||| ||||| || |||| ||| ||||| || || || |||
Sbjct 461 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTACCAGTAAGA 520
Query 34962 GTCTTCACAAAGATCTGCATA 34982
|| ||||| || |||||||||
Sbjct 521 GTTTTCACGAAAATCTGCATA 541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324559871144280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |