Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq616 165 9e-36 >seq616 Length=79441 Score = 165 bits (182), Expect = 9e-36 Identities = 303/438 (69%), Gaps = 12/438 (3%) Strand=Plus/Minus Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 ||||| ||||||||||| || | ||| ||||| | | |||||||||||||| || ||| Sbjct 56671 ATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTGCCGCCT 56612 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 ||||| | |||| ||||||||||| || || | ||||||||| || | ||||| ||| Sbjct 56611 TGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGAT 56552 Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA--CTAATTGAAATAC 48483 | || || || || ||| | ||| | || | || ||| | || || || Sbjct 56551 GTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTCAA--AC 56494 Query 48484 CTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTT 48543 | || || || || | || |||||||||||||| | || || ||||| ||||| || Sbjct 56493 CGATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAATACCCG 56434 Query 48544 CTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG--ATGACAAGT 48601 | || ||| || |||| | || |||||||| || | |||||| || | || Sbjct 56433 CAATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATAGC--GT 56376 Query 48602 TCCTGAATTAAATAATGTTGGAGATGCATGAAT--AAACCATTTCTCTGATAACAATTTA 48659 ||| | |||||| | |||||| ||||||||| | || | ||| || || | | || Sbjct 56375 TCCAGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAGA--TTG 56318 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 || ||||| ||| | | ||| |||||| ||| ||||| | | ||| ||||| | | Sbjct 56317 TACGTTTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATAAGC 56258 Query 48720 ATATATTGAGGTCTTTCA 48737 || | ||| ||||||||| Sbjct 56257 ATGTGTTGTGGTCTTTCA 56240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561977863781400