Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2032 118 9e-21 seq2124 111 1e-18 seq1455 107 2e-17 seq2276 100 2e-15 >seq2032 Length=33350 Score = 118 bits (130), Expect = 9e-21 Identities = 494/773 (64%), Gaps = 14/773 (2%) Strand=Plus/Minus Query 551782 CTACTAGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATG 551839 ||||| |||||| | |||||||| || || || || || || | |||| | || Sbjct 5236 CTACTGCTGGAGACACGCATCTTGGAGGGGAGGACTTCGACAACCGCATGGTCAACCACT 5177 Query 551840 GTGTGTTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCT 551899 |||| | ||| || ||||||||| |||| || ||| || | | || || Sbjct 5176 TTGTG--GCAGAGTTCAAACGAAAACACAAGAAAGACCTAAACACTAATCCTCGTGCGCT 5119 Query 551900 TCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAAC 551959 | || || | |||||||||||| | || ||||| | |||||||| | || | Sbjct 5118 CAGACGCCTTCGTACTGCTTGCGAACGCGCTAAACGTACACTTTCATCGTCATCGCAGGC 5059 Query 551960 CACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGC 552019 | ||||| | || ||| | ||||| || ||||||| | ||| ||| | | || Sbjct 5058 TTCCATTGAGATTGACTCACTCTTTGAAGGCATTGATTTCTACACGAACATTACCCGTGC 4999 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 | ||||| || ||||| | |||||||| | || || || || || | | |||| Sbjct 4998 CCGCTTTGAGGAGCTTTGTGCCGATCTCTTCCGGTCGACCATGGACCCTGTTG-AGAAGT 4940 Query 552080 -TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGAT 552138 | | || ||| | || || || || | || | || ||||| |||||||| || | Sbjct 4939 CTCTTAGGGATGCCAAAATGGACAAGAGTCAGGTGAACGACATTGTACTTGTTGGAGGTT 4880 Query 552139 CTACAAGAATTCCTAAAATTCGCGAAATGTTAAGT----TCTTATTTCAATGGTAAAAAA 552194 | || | ||||||||| | || ||| || || ||| |||| ||| ||| || Sbjct 4879 CGACGCGTATTCCTAAAGT--GCAAAAGCTTCTGTCTGATCTGTTTTC--TGGAAAAGAA 4824 Query 552195 TTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCT 552254 | || || | | || |||||||| || || || || ||||| || | || || || Sbjct 4823 CTGAACAAATCTATCAACCCAGATGAAGCAGTCGCTTACGGTGCTGCGGTGCAGGCCGCC 4764 Query 552255 ATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCT 552314 || ||||| || | | |||| | ||| || || ||||| | ||||| |||| Sbjct 4763 ATCCTTTCAGGCGATAAATCTGAAGCGGTCCAAGATCTTCTACTTCTTGATGTCGCTCCA 4704 Query 552315 CTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACT 552374 || || |||||| | || || | ||||||| |||||||| | | || | || || || Sbjct 4703 CTCTCGCTTGGTATTGAGACTGCTGGAGGTGTTATGACTGCTTTGATTAAGAGGAACACC 4644 Query 552375 ACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTT 552434 || || ||| || | | | || | || || || || || || | | || Sbjct 4643 ACAATCCCTACGAAGACAAGCCAAACGTTCACGACATACTCCGACAACCAGCCAGGGGTA 4584 Query 552435 ACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACT 552494 || || | |||||||||||| || | || ||||| ||||| | ||||| | Sbjct 4583 TTGATCCAGGTCTTTGAAGGAGAACGAGCGATGACGAAAGACAATAACCTTCTTGGGAAG 4524 Query 552495 TTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGT 552547 || | | || ||||| || ||||| |||||||| || || ||||| || Sbjct 4523 TTCGAGCTGTCTGGAATTCCGCCAGCTCCACGTGGAGTGCCACAGATTGAGGT 4471 Score = 102 bits (112), Expect = 7e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 ||| || || || || || || || || ||||||||||| || || ||||| ||||| || Sbjct 5478 GGACGCCGTCATTACCGTCCCCGCTTACTTTAATGACTCTCAGCGCCAAGCCACTAAGGA 5419 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| ||| || || |||||||| ||||| || || || || || || |||||||| Sbjct 5418 TGCAGGAGCTATCGCCGGTCTTAATGTCCTTCGAATCATAAACGAGCCAACAGCTGCTGC 5359 Query 550516 ACTTGCATATGGACTTGATAA 550536 | |||||||| || || || Sbjct 5358 TATCGCATATGGTCTCGACAA 5338 >seq2124 Length=31866 Score = 111 bits (122), Expect = 1e-18 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 |||||||| | || ||| | || || ||||||| | |||||||| | | || Sbjct 25438 AAACAATTCACCCCTGAAGAGATCTCGGCTATGGTGCTGGGAAAAATGAAGGAGATTGCG 25497 Query 550370 -AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 ||| | | | |||| | || || | | |||| || | ||||| ||||| || || || Sbjct 25498 GAGT-CATATCTTGGAAAGGAGGTGAAGCATGCTGTTGTCACTGTCCCAGCGTACTTCAA 25556 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCT-GGACGTATTGCTGGACTTAATGTTCTTC 550487 || | ||||||||||| || || |||||| ||||| |||||||| || || || | | Sbjct 25557 CGATGCGCAACGTCAAGCCACAAAGGATGCTGGGACG-ATTGCTGGCCTAAACGTCGTGC 25615 Query 550488 GTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 | || ||||| || |||||||||||||| | |||||||| |||||||| Sbjct 25616 GAATAATCAACGAGCCTACTGCTGCTGCCATCGCATATGGTCTTGATAA 25664 >seq1455 Length=44427 Score = 107 bits (118), Expect = 2e-17 Identities = 111/143 (78%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || |||| ||||||||| ||||||||||| ||||| ||||||||||| | Sbjct 401 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 460 Query 563395 TTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| || || |||| || || ||||| || | || ||||||||||| Sbjct 461 TTCACGTTCTCTATCGTGTCAGATGCCTCGAC-CTCGAGGGTGATGGTCTTACCAGTAAG 519 Query 563454 AGTTTTAACGAAAATTTGCATAG 563476 |||||| |||||||| ||||||| Sbjct 520 AGTTTTCACGAAAATCTGCATAG 542 >seq2276 Length=29858 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || || ||||| | || || ||||| || || |||||||||||||| ||||| ||| Sbjct 6555 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 6496 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 ||||| |||||||||||| | | | | || ||||||||||| || || ||||| Sbjct 6495 GCCTTTACATTCTCAATTGTATCCGAG-GCTTCCACTTCGAGAGTAATGGTCTTCCCAGT 6437 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||||| || || |||||||| Sbjct 6436 CAGAGTTTTCACAAAGATTTGCAT 6413 Score = 100 bits (110), Expect = 2e-15 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || || ||||| | || || ||||| || || |||||||||||||| ||||| ||| Sbjct 7160 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 7101 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 ||||| |||||||||||| | | | | || ||||||||||| || || ||||| Sbjct 7100 GCCTTTACATTCTCAATTGTATCCGAG-GCTTCCACTTCGAGAGTAATGGTCTTCCCAGT 7042 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 |||||||| || || |||||||| Sbjct 7041 CAGAGTTTTCACAAAGATTTGCAT 7018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028310497156150