Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2276 105 5e-18 seq1455 89.7 4e-13 seq7835 87.8 1e-12 >seq2276 Length=29858 Score = 105 bits (116), Expect = 5e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 |||||||| || ||||| | ||||||||| || || || ||||||||||| ||||| ||| Sbjct 6555 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 6496 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| | || | || || || | ||||||||| ||||| | || || || || Sbjct 6495 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 6436 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | |||||| ||||| || ||||| | | |||||| Sbjct 6435 AGAGTTTTCACAAAGATTTGCATTCCTCCACGAAGA 6400 Score = 105 bits (116), Expect = 5e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 |||||||| || ||||| | ||||||||| || || || ||||||||||| ||||| ||| Sbjct 7160 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 7101 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 |||||| | || | || || || | ||||||||| ||||| | || || || || Sbjct 7100 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 7041 Query 101447 AAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 | |||||| ||||| || ||||| | | |||||| Sbjct 7040 AGAGTTTTCACAAAGATTTGCATTCCTCCACGAAGA 7005 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || ||||||||||| ||||| || || || || |||||||| |||||||| Sbjct 7764 CTTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATCCCCTCTTTATCCTGAATTTT 7705 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | || ||| | || | |||||||| | || || || | || | || || || || Sbjct 7704 TGTCTTCACATTCTCAATGGTGTCAGAGGCCTCAACCTCTAATGTTATGGTCTTTCCCGT 7645 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||||||||||||| Sbjct 7644 AAGCGTTTTTACAAATATCTGCAT 7621 >seq1455 Length=44427 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| |||| || || ||||| || ||||| || ||||| ||||||||||| Sbjct 397 CTCACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTT 456 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | |||| |||||||| | || || || || |||| || || || || Sbjct 457 GGCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTACCAGT 516 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | |||||| || || |||||||| Sbjct 517 AAGAGTTTTCACGAAAATCTGCAT 540 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| |||| || || ||||| || ||||| || ||||| ||||||||||| Sbjct 89 CTCACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTT 148 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | |||| |||||||| | || || || || |||| || || || || Sbjct 149 GGCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGT 208 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || |||||||||||| Sbjct 209 AAGCGTCTTCACGAATATCTGCATG 233 >seq7835 Length=5652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 || |||| ||||| |||| || || ||||| || ||||| || ||||| |||||||||| Sbjct 4211 GCATACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTT 4270 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | ||| || | |||| |||||||| | || || || || |||| || || || | Sbjct 4271 TGGCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCG 4330 Query 101445 TTAAAGTTTTTACAAATATCTGCATG 101470 | | || || || |||||||||||| Sbjct 4331 TAAGCGTCTTCACGAATATCTGCATG 4356 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| |||| || || ||||| || ||||| || ||||| ||||||||||| Sbjct 4520 CTCACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTT 4579 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | |||| |||||||| | || || || || |||| || || || || Sbjct 4580 GGCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGT 4639 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || |||||||||||| Sbjct 4640 AAGCGTCTTGACGAATATCTGCATG 4664 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| |||| || || ||||| || ||||| || ||||| ||||||||||| Sbjct 4828 CTCACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTT 4887 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | |||| |||||||| | || || || || |||| || || || || Sbjct 4888 GGCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGT 4947 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || |||||||||||| Sbjct 4948 AAGCGTCTTCACGAATATCTGCATG 4972 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| |||| || || ||||| || ||||| || ||||| ||||||||||| Sbjct 5136 CTCACCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTT 5195 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | |||| |||||||| | || || || || |||| || || || || Sbjct 5196 GGCTTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGT 5255 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || || |||||||||||| Sbjct 5256 AAGCGTCTTCACGAATATCTGCATG 5280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396188399602695