Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2124 109 4e-18 seq2032 105 4e-17 >seq2124 Length=31866 Score = 109 bits (120), Expect = 4e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 474647 AAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG 474706 |||||||| | || ||| | || || | ||||| | | |||||||| | | ||| Sbjct 25438 AAACAATTCACCCCTGAAGAGATCTCGGCTATGGTGCTGGGAAAAATGAAGGAGATTGCG 25497 Query 474707 AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAAT 474766 |||||||||||| | || || | |||| || | ||||| ||||| || || || Sbjct 25498 GAGTCATATCTTGGAAAGGAGGTGAAGCATGCTGTTGTCACTGTCCCAGCGTACTTCAAC 25557 Query 474767 GATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGT 474826 ||| | ||||||||||| || || ||||| || | ||||| || || || || | || Sbjct 25558 GATGCGCAACGTCAAGCCACAAAGGATGCTGGGACGATTGCTGGCCTAAACGTCGTGCGA 25617 Query 474827 ATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || || || || || || || || | || ||||||||||||||||| Sbjct 25618 ATAATCAACGAGCCTACTGCTGCTGCCATCGCATATGGTCTTGATAAGAA 25667 >seq2032 Length=33350 Score = 105 bits (116), Expect = 4e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 || || || ||||| || || || || |||||||| ||||| || ||||| ||||| ||| Sbjct 5477 GACGCCGTCATTACCGTCCCCGCTTACTTTAATGACTCTCAGCGCCAAGCCACTAAGGAT 5418 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || ||| || || ||||||||||| | || || || || || |||||||| || || Sbjct 5417 GCAGGAGCTATCGCCGGTCTTAATGTCCTTCGAATCATAAACGAGCCAACAGCTGCTGCT 5358 Query 474854 CTTGCTTATGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGT 474913 | || |||||||| || ||||| | | || ||||||| | || |||||| | Sbjct 5357 ATCGCATATGGTCTCGACAAGAAGGGTACCGGGGAGAGAAATGTTCTCATATTTGATCTT 5298 Query 474914 GGAGGT 474919 |||||| Sbjct 5297 GGAGGT 5292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267379854432980