Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq616 105 3e-18 >seq616 Length=79441 Score = 105 bits (116), Expect = 3e-18 Identities = 260/388 (67%), Gaps = 6/388 (2%) Strand=Plus/Minus Query 26021 TCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCT 26080 || |||||||||| |||||||| || | |||||| ||||| ||| || ||| Sbjct 56677 TCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTG 56618 Query 26081 CCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCA 26140 || |||||||| ||||||| ||||| | ||| | || ||||||||||| || ||| Sbjct 56617 CCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCA 56558 Query 26141 GTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGA 26200 | || ||||| |||| | |||| || || || | | ||| | || | | Sbjct 56557 TTGGATGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTC 56498 Query 26201 ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATT 26260 | ||||||||| ||||| | || || || ||||| | | ||||||| |||| Sbjct 56497 AAACCGATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAATA 56438 Query 26261 CCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCG--AATGAG 26318 || || ||| | |||| || | |||||| || || | ||||| || || Sbjct 56437 CCCGCAATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCAT-AG 56379 Query 26319 TTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCA-AAGCT 26377 ||||| | |||||| | ||| |||| |||||||| |||| | |||||||| || | Sbjct 56378 -CGTTCCAGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAGAT 56320 Query 26378 GTATAAGTTTCAAGAACTTCATCGATAT 26405 | || ||||| | | || ||||||||| Sbjct 56319 -TGTACGTTTCGATAGCTGCATCGATAT 56293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252982531057625