Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2032 374 1e-98 seq1455 143 4e-29 seq7835 140 4e-28 seq2276 134 2e-26 seq2226 123 3e-23 >seq2032 Length=33350 Score = 374 bits (414), Expect = 1e-98 Identities = 687/995 (69%), Gaps = 10/995 (1%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || |||||||| | ||| || || || || || || ||||| || | ||||| Sbjct 5465 ACCGTCCCCGCTTACTTTAATGACTCTCAGCGCCAAGCCACTAAGGATGCAGGAGCTATC 5406 Query 195779 GCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGG 195837 || ||||| || |||| || |||| || || || |||||||| ||||| || || ||||| Sbjct 5405 GCCGGTCTTAA-TGTCCTTCGAATCATAAACGAGCCAACAGCTGCTGCTATCGCATATGG 5347 Query 195838 TCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTAC 195897 ||| |||||||| || || | |||||| | || |||||||| || ||||| || Sbjct 5346 TCTCGACAAGAAGGGTACCGGGGAGAGAAATGTTCTCATATTTGATCTTGGAGGTGGAAC 5287 Query 195898 GTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGG 195957 ||||| || || | || | ||||||| ||| || |||||||| ||| |||||||||| Sbjct 5286 ATTTGACGTGTCCATCCTAACCATTGAAGATGGCATTTTCGAAGTGAAGTCTACTGCTGG 5227 Query 195958 TGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTGATG 196016 || || ||||| || || || || ||||| || | || || ||||| | | Sbjct 5226 AGACACGCATCTTGGAGGGGAGGACTTCGACAACCGCATGGTCAACCACTTTGTGGCA-G 5168 Query 196017 AGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTA 196076 ||||| ||||| | |||||||| | |||||| | || || | || ||| Sbjct 5167 AGTTCAAACGAAAACACAAGAAAGACCTAAACACTAATCCTCGTGCGCTCAGACGCCTTC 5108 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGA 196136 | ||||| || ||||| || ||||| || || || || | | || | |||||| Sbjct 5107 GTACTGCTTGCGAACGCGCTAAACGTACACTTTCATCGTCATCGCAGGCTTCCATTGAGA 5048 Query 196137 TTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAG 196196 |||| || | ||||| || ||||| ||||| || | ||||||||||| || ||||| | Sbjct 5047 TTGACTCACTCTTTGAAGGCATTGATTTCTACACGAACATTACCCGTGCCCGCTTTGAGG 4988 Query 196197 AGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTA-CTTCGTGAC 196255 || | | ||| | || || | ||||| |||||||| |||| ||| | || Sbjct 4987 AGCTTTGTGCCGATCTCTTCCGGTCGACCATGGACCCTGTTGAG-AAGTCTCTTAGGGAT 4929 Query 196256 GCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATT 196315 || || ||||| ||| | |||| | || ||||| ||||| ||||| || || |||||| Sbjct 4928 GCCAAAATGGACAAGAGTCAGGTGAACGACATTGTACTTGTTGGAGGTTCGACGCGTATT 4869 Query 196316 CCGAAGATTCAACAGATGCTTTCT-AGCT-TCTTCAATAATAAAGATTTAAACAAAACGA 196373 || || | ||| || | || ||| | || | ||| || |||| | |||||| | | Sbjct 4868 CCTAAAGTGCAAAAGCTTCTGTCTGATCTGTTTTCTGGAA--AAGAACTGAACAAATCTA 4811 Query 196374 TCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTG 196433 ||||||| ||||||||||| ||||| ||||| || || ||||| || || || ||||| | Sbjct 4810 TCAACCCAGATGAAGCAGTCGCTTACGGTGCTGCGGTGCAGGCCGCCATCCTTTCAGGCG 4751 Query 196434 TTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTC 196493 | | | | |||||||||||||| || |||||||| || || | || || ||| Sbjct 4750 ATAAATCTGAAGCGGTCCAAGATCTTCTACTTCTTGATGTCGCTCCACTCTCGCTTGGTA 4691 Query 196494 TTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTA 196553 |||| || || || |||||||||||| | ||| | |||||||| || || || || | Sbjct 4690 TTGAGACTGCTGGAGGTGTTATGACTGCTTTGATTAAGAGGAACACCACAATCCCTACGA 4631 Query 196554 AGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTAT 196613 ||| ||| || | || || ||||| || || ||||| || || || || | Sbjct 4630 AGACAAGCCAAACGTTCACGACATACTCCGACAACCAGCCAGGGGTATTGATCCAGGTCT 4571 Query 196614 ATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGG 196673 |||||||||||| | | || || || | || ||||| | ||||| || | | Sbjct 4570 TTGAAGGAGAACGAGCGATGACGAAAGACAATAACCTTCTTGGGAAGTTCGAGCTGTCTG 4511 Query 196674 GGATTCCAGCTGCACCCAGAGGTGTTCCACAGATT 196708 | ||||| | || || | || || ||||||||| Sbjct 4510 GAATTCCGCCAGCTCCACGTGGAGTGCCACAGATT 4476 >seq1455 Length=44427 Score = 143 bits (158), Expect = 4e-29 Identities = 117/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || |||||||| |||||||| || || |||||||||||||| ||| | || Sbjct 541 TATGCAGATTTTCGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTCGAGGCATC 482 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| || || ||| | |||||||| |||||||| || || || ||||| || ||||| Sbjct 481 TGACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCA 422 Query 171981 GCAACGACTTATTTTTGCTGGT 172002 ||||||||| || ||||||||| Sbjct 421 GCAACGACTGATCTTTGCTGGT 400 Score = 138 bits (152), Expect = 1e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || ||||| ||||| || |||||||||||||| ||| | || Sbjct 232 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 173 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | |||||||| |||||||| || || || ||||| || |||||| Sbjct 172 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 113 Query 171982 CAACGACTTATTTTTGCTGGT 172002 |||||||| || ||||||||| Sbjct 112 CAACGACTGATCTTTGCTGGT 92 >seq7835 Length=5652 Score = 140 bits (154), Expect = 4e-28 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || ||||| ||||| || |||||||||||||| ||| | || Sbjct 4355 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4296 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | |||||||| |||||||| || || || ||||| || |||||| Sbjct 4295 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 4236 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||||| || |||||||||| Sbjct 4235 CAACGACTGATCTTTGCTGGTA 4214 Score = 138 bits (152), Expect = 1e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || ||||| ||||| || |||||||||||||| ||| | || Sbjct 4971 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4912 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | |||||||| |||||||| || || || ||||| || |||||| Sbjct 4911 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 4852 Query 171982 CAACGACTTATTTTTGCTGGT 172002 |||||||| || ||||||||| Sbjct 4851 CAACGACTGATCTTTGCTGGT 4831 Score = 138 bits (152), Expect = 1e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || ||||| ||||| || |||||||||||||| ||| | || Sbjct 5279 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 5220 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | |||||||| |||||||| || || || ||||| || |||||| Sbjct 5219 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 5160 Query 171982 CAACGACTTATTTTTGCTGGT 172002 |||||||| || ||||||||| Sbjct 5159 CAACGACTGATCTTTGCTGGT 5139 Score = 132 bits (146), Expect = 6e-26 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || || || ||||| ||||| || |||||||||||||| ||| | || Sbjct 4663 ATGCAGATATTCGTCAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4604 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| | |||||||| |||||||| || || || ||||| || |||||| Sbjct 4603 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 4544 Query 171982 CAACGACTTATTTTTGCTGGT 172002 |||||||| || ||||||||| Sbjct 4543 CAACGACTGATCTTTGCTGGT 4523 Score = 131 bits (144), Expect = 2e-25 Identities = 108/132 (82%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 171871 TTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATC 171930 || ||||| || ||||| ||||| || |||||||||||||| ||| | || ||||| || Sbjct 5578 TTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCTGACACGATA 5519 Query 171931 GATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTT 171990 || ||| | |||||||| |||||||| || || || ||||| || |||||||||||||| Sbjct 5518 GAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAACGACTG 5459 Query 171991 ATTTTTGCTGGT 172002 || ||||||||| Sbjct 5458 ATCTTTGCTGGT 5447 >seq2276 Length=29858 Score = 134 bits (148), Expect = 2e-26 Identities = 118/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171858 TAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTC 171917 ||| |||||||||||||||||||| |||||||| ||||| ||||| |||||||| || | Sbjct 6108 TAGCATGCAAATCTTTGTGAAAACGCTTACTGGTAAAACGATCACACTCGAGGTGGAAGC 6167 Query 171918 GTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGA 171977 ||| || || || || || | || || ||||| || |||||||| || || ||||| || Sbjct 6168 GTCCGATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGA 6227 Query 171978 TCAGCAACGACTTATTTTTGCTGGTAA 172004 |||||| |||| ||||| || ||||| Sbjct 6228 TCAGCAGAGACTGATTTTCGCAGGTAA 6254 Score = 132 bits (146), Expect = 6e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||||||||| || ||||| ||||| ||||| |||||||| || |||| Sbjct 6717 ATGCAAATCTTTGTGAAAACGCTAACTGGTAAAACGATCACACTCGAGGTGGAAGCGTCC 6776 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || ||| | || || ||||| || |||||||| || || ||||| |||||| Sbjct 6777 GATACTATTGAAAACGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAG 6836 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || |||| ||||| || ||||| Sbjct 6837 CAGAGACTGATTTTCGCAGGTAA 6859 Score = 132 bits (146), Expect = 6e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||||||||| |||||||| ||||| ||||| |||||||| || |||| Sbjct 7319 ATGCAAATCTTTGTGAAAACGCTTACTGGTAAAACGATCACACTCGAGGTGGAAGCGTCC 7378 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || || ||||| || |||||||| || || ||||| |||||| Sbjct 7379 GATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAG 7438 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || | |||||||| || ||||| Sbjct 7439 CAGAGGCTTATTTTCGCAGGTAA 7461 Score = 105 bits (116), Expect = 9e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||||||||| || ||||| || || || || ||||| || || | || Sbjct 6413 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTCG 6472 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 6473 GATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCAA 6532 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || | | ||||| || ||||| Sbjct 6533 CAGAGGTTGATTTTCGCAGGTAA 6555 Score = 105 bits (116), Expect = 9e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||||||||| || ||||| || || || || ||||| || || | || Sbjct 7018 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTCG 7077 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | || || |||||||| ||||| ||||| || ||||| ||||| Sbjct 7078 GATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCAA 7137 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || | | ||||| || ||||| Sbjct 7138 CAGAGGTTGATTTTCGCAGGTAA 7160 >seq2226 Length=30398 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| |||||||| || ||||||||||| || ||||| || ||||||||| | || Sbjct 22347 ATGCAAATTTTTGTGAAGACTCTTACTGGAAAGACCATCACTCTTGAGGTTGAGGCATCG 22406 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | ||||| ||||| || || || || || || || ||||||||| Sbjct 22407 GATACCATCGAAAATGTTAAAGCGAAGATACAGGACAAAGAGGGTATACCTCCCGATCAG 22466 Query 171982 CAACGACTTATTTTTGCTGGT 172002 ||||| || || || |||||| Sbjct 22467 CAACGTCTAATCTTCGCTGGT 22487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657709159177200