Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2276 111 3e-19 >seq2276 Length=29858 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| | |||||| |||||||| || ||||| || ||||| || || || Sbjct 6859 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 6800 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | || | ||| |||||||||||| | || || || || || || |||||||| ||| Sbjct 6799 GCCTTCACGTTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTT 6740 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 |||||||| ||||| ||||||||| Sbjct 6739 AGCGTTTTCACAAAGATTTGCATT 6716 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| | |||||| |||||||| || ||||| || ||||| || || || Sbjct 6254 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 6195 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | || | |||| |||||||||||| | || || || || || || |||||||| || Sbjct 6194 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 6135 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 |||||||| ||||| |||||||| Sbjct 6134 AGCGTTTTCACAAAGATTTGCAT 6112 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| || ||||||||||| || || |||||||||||||| || || || Sbjct 6555 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 6496 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | |||| ||| ||| ||||| || | || ||||| ||||| || || || || || Sbjct 6495 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 6436 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 || ||||| ||||| ||||||||| Sbjct 6435 AGAGTTTTCACAAAGATTTGCATT 6412 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| || ||||||||||| || || |||||||||||||| || || || Sbjct 7160 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 7101 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | |||| ||| ||| ||||| || | || ||||| ||||| || || || || || Sbjct 7100 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 7041 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 || ||||| ||||| ||||||||| Sbjct 7040 AGAGTTTTCACAAAGATTTGCATT 7017 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| | ||||| |||||||| || ||||| || ||||| || || || Sbjct 7461 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 7402 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | || | |||| |||||||||||| | || || || || || || |||||||| || Sbjct 7401 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 7342 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 |||||||| ||||| ||||||||| Sbjct 7341 AGCGTTTTCACAAAGATTTGCATT 7318 Score = 100 bits (110), Expect = 5e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || || ||||| || | ||| ||||| || || || || |||||||| || ||||| Sbjct 7763 TTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATCCCCTCTTTATCCTGAATTTTT 7704 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 || || | ||| ||| || || || | |||||| |||| ||||| || || || || Sbjct 7703 GTCTTCACATTCTCAATGGTGTCAGAGGCCTCAACCTCTAATGTTATGGTCTTTCCCGTA 7644 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 ||||||||||||||||| ||||| Sbjct 7643 AGCGTTTTTACAAATATCTGCAT 7621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899444836753200