Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2276 89.7 8e-13 >seq2276 Length=29858 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| ||||||| || || ||||| | ||||| |||| || Sbjct 6412 AATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTC 6471 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || || || || ||||||||||| || || ||||| || Sbjct 6472 GGATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCA 6531 Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965 ||| || ||||||| || ||||| Sbjct 6532 ACAGAGGTTGATTTTCGCAGGTAA 6555 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | ||||| ||||||| || || ||||| | ||||| |||| || Sbjct 7017 AATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTC 7076 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || || || || || || ||||||||||| || || ||||| || Sbjct 7077 GGATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCA 7136 Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965 ||| || ||||||| || ||||| Sbjct 7137 ACAGAGGTTGATTTTCGCAGGTAA 7160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731701519566000