Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2276 107 3e-18 >seq2276 Length=29858 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| || ||||| || |||||||| || ||||| |||||||||||||| || || || Sbjct 6555 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 6496 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 |||||||| || ||||| || | ||| ||||| ||||||||||| || ||||| Sbjct 6495 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 6436 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | ||||| | || || |||||| Sbjct 6435 AGAGTTTTCACAAAGATTTGCATT 6412 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| || ||||| || |||||||| || ||||| |||||||||||||| || || || Sbjct 7160 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 7101 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 |||||||| || ||||| || | ||| ||||| ||||||||||| || ||||| Sbjct 7100 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 7041 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | ||||| | || || |||||| Sbjct 7040 AGAGTTTTCACAAAGATTTGCATT 7017 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 171914 GTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTT 171973 ||| | ||| | ||||| || ||||| | |||||| || |||||||| ||||| || || Sbjct 6872 GTCGTACAACCGCTTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTT 6813 Query 171974 ATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAAT 172033 ||| || || || || || || |||||||| |||| ||| || || || || || Sbjct 6812 ATCCTGGATCTTCGCCTTCACGTTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGAT 6753 Query 172034 GGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||||||||| ||||| | || || |||||| Sbjct 6752 CGTTTTACCAGTTAGCGTTTTCACAAAGATTTGCATT 6716 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 171914 GTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTT 171973 ||| | ||| | ||||| || ||||| | |||||| || |||||||| ||||| || || Sbjct 6267 GTCGTACAACCGCTTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTT 6208 Query 171974 ATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAAT 172033 ||| || || || || ||||| |||||||| |||| ||| || || || || || Sbjct 6207 ATCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGAT 6148 Query 172034 GGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||||||| | ||||| | || || ||||| Sbjct 6147 CGTTTTACCAGTAAGCGTTTTCACAAAGATTTGCAT 6112 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171927 TTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 171986 ||||| || ||||| | ||||| || |||||||| ||||| || ||||| || || || Sbjct 7461 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 7402 Query 171987 TTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 172046 || ||||| |||||||| |||| ||| || || || || || ||||||||||| Sbjct 7401 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 7342 Query 172047 AATGTTTTAATGAATATCTGCATT 172070 | ||||| | || || |||||| Sbjct 7341 AGCGTTTTCACAAAGATTTGCATT 7318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904925159883000