Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq7511 114 2e-19 seq5563 111 2e-18 seq2947 102 1e-15 seq6732 96.9 4e-14 >seq7511 Length=6127 Score = 114 bits (126), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||||| || || ||||||||||||||||| | || Sbjct 4968 GCTTGGCAAGCTCTCCTGGGAGGATCAGTCGGACAGCGGTCTGGATCTCGCGAGAAGAGA 4909 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || ||||| |||||| | | ||||| |||| || Sbjct 4908 TGGTCGATCGCTTGTTGTAGTGAGCAAGACGCGAGGCCTCAGCTGCTATGCGTTCGAACA 4849 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| |||||||||||||||| ||||||| ||| || | || |||||| | Sbjct 4848 CGTCGTTCACAAACGAGTTCATGATGGACATCGCCTTCGACGAAACTCCGGTGTCGGGAT 4789 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || |||||||| || ||||||| Sbjct 4788 GAACTTGCTTGAGTACACGGTAGATG 4763 >seq5563 Length=10220 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||||| ||||| ||||||||||| ||||| | | || Sbjct 760 GCTTGGCGAGCTCTCCTGGGAGGATCAGTCGCACCGCGGTCTGGATTTCGCGGGAGGAGA 819 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| |||| || ||||| ||||| | | | || || |||| | Sbjct 820 TGGTCGATCGCTTGTTGTAGTGAGCAAGACGTGAAGCCTCAGCGGCAATACGCTCGAAAA 879 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || || |||||||||| |||||||| ||| || | ||| |||||| | Sbjct 880 CGTCGTTCACGAAAGAGTTCATGATCGACATCGCCTTCGACGAAACGCCGGTGTCGGGAT 939 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || |||||||| || ||||||| Sbjct 940 GAACTTGCTTGAGAACACGGTAGATG 965 >seq2947 Length=22663 Score = 102 bits (112), Expect = 1e-15 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 ||||||| || || || | | |||||| || || ||||||||||| ||||| | || Sbjct 9935 GCCTGGCGAGCTCTCCTGGGAGGATCAGTCGGACAGCGGTCTGGATTTCGCGGGAAGAGA 9876 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||||| ||||||| ||||| ||||| | | | || |||| || Sbjct 9875 TGGTCGATCGCTTGTTGTAGTGCGCAAGACGCGAAGCCTCAGCAGCAGTACGTTCGAGCA 9816 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| || ||||| |||||||||| ||||||| ||| || | || |||||| | Sbjct 9815 CGTCATTCACAAATGAGTTCATGATGGACATCGCCTTTGAAGAAACTCCGGTGTCGGGAT 9756 Query 1254523 GCACCTGCTTGAGCAC 1254538 | |||||||||||||| Sbjct 9755 GAACCTGCTTGAGCAC 9740 >seq6732 Length=7445 Score = 96.9 bits (106), Expect = 4e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | |||||| | || || |||||||| ||||| | | Sbjct 5863 GCTTGGCGAGCTCTCCTGGAAGGATCAGTCTGACTGCAGTCTGGATTTCGCGGGATGAAA 5922 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| ||||||| ||||| ||||| | | || || |||| | Sbjct 5923 TGGTCGAGCGCTTGTTGTAGTGCGCAAGACGCGAAGCCTCAGCAGCAATACGTTCGAAGA 5982 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| |||||||||||||||| |||||||| ||| || | || |||||| | Sbjct 5983 CGTCGTTCACAAACGAGTTCATGATCGACATCGCCTTTGACGATACTCCTGTGTCGGGAT 6042 Query 1254523 GCACCTGCTTGAGCAC 1254538 | ||||||||||| || Sbjct 6043 GAACCTGCTTGAGGAC 6058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105609924632295