Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq616 104 2e-17 seq2276 100 3e-16 seq1455 98.7 9e-16 seq7835 95.1 1e-14 >seq616 Length=79441 Score = 104 bits (114), Expect = 2e-17 Identities = 285/432 (66%), Gaps = 11/432 (3%) Strand=Plus/Minus Query 139498 TCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---G 139554 || |||| || || |||||||| || |||||||| || | || ||| ||||| | Sbjct 56677 TCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTG 56618 Query 139555 CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCG 139614 || |||||||| |||| ||| ||| ||| ||| ||||||| ||||| || ||| || Sbjct 56617 CCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCA 56558 Query 139615 CTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGCTCGGACGTCATGTACA 139671 | | ||| ||||| |||| || || | || || || || | | ||| || Sbjct 56557 TTGGATGTGCCGTTAGTGCCACTAATCAATGAACCAGTG---GCCCGAATTTTATGCACG 56501 Query 139672 TTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAA-TGTCTCGTA 139730 || | |||||||| || | || ||||||| | | || | || | | ||| ||||| Sbjct 56500 TTCAAACCGATTCCTCCAGCGCTCTTCGATATTAGAGCACATT-GCTTCAGTGTATCGTA 56442 Query 139731 TATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAG 139790 ||||| || || || |||||| | |||||| || || ||||||||||| Sbjct 56441 AATACCCGCAATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCA 56382 Query 139791 TTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAA 139850 | ||| || || ||||| || || || || ||||| ||| ||| | Sbjct 56381 TAGCGTTCCAGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAG 56322 Query 139851 TTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCAT 139910 | |||||||||||| || | |||||| || || |||||||| | || ||||| Sbjct 56321 ATTGTACGTTTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCAT 56262 Query 139911 CAGCATATGTTG 139922 ||||| ||||| Sbjct 56261 AAGCATGTGTTG 56250 >seq2276 Length=29858 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || || || ||||| |||||||| |||||| | Sbjct 6413 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTCG 6472 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | ||||| |||||| || || ||||||||||| || || |||||| Sbjct 6473 GATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCAA 6532 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || | ||||| || || || || Sbjct 6533 CAGAGGTTGATTTTCGCAGGTAA 6555 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| || || || || || ||||| |||||||| |||||| | Sbjct 7018 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTCG 7077 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | || | ||||| |||||| || || ||||||||||| || || |||||| Sbjct 7078 GATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCAA 7137 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || | ||||| || || || || Sbjct 7138 CAGAGGTTGATTTTCGCAGGTAA 7160 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||||||||| |||||||| || || ||||| || ||||| || Sbjct 6717 ATGCAAATCTTTGTGAAAACGCTAACTGGTAAAACGATCACACTCGAGGTGGAAGCGTCC 6776 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| || || || ||||| || || ||||| Sbjct 6777 GATACTATTGAAAACGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAG 6836 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || | |||| || || || || Sbjct 6837 CAGAGACTGATTTTCGCAGGTAA 6859 >seq1455 Length=44427 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || ||||| || || || ||||| || || || | Sbjct 540 ATGCAGATTTTCGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTCGAGGCATCT 481 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| |||| ||| | ||| || ||||||||||| ||||| ||||| ||||| Sbjct 480 GACACGATAGAGAACGTGAAAGCCAAA-ATTCAAGACAAAGAGGGAATTCCTCCAGATCA 422 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||| |||||||||| || Sbjct 421 GCAACGACTGATCTTTGCTGG 401 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || || || || || || ||||| || || || | Sbjct 232 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 173 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| |||| ||| | ||| || ||||||||||| ||||| ||||| ||||| Sbjct 172 GACACGATAGAGAACGTGAAAGCCAAA-ATTCAAGACAAAGAGGGAATTCCTCCAGATCA 114 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||| |||||||||| || Sbjct 113 GCAACGACTGATCTTTGCTGG 93 >seq7835 Length=5652 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || || || || || || ||||| || || || | Sbjct 4355 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4296 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| |||| ||| | ||| || ||||||||||| ||||| ||||| ||||| Sbjct 4295 GACACGATAGAGAACGTGAAAGCCAAA-ATTCAAGACAAAGAGGGAATTCCTCCAGATCA 4237 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||| |||||||||| || Sbjct 4236 GCAACGACTGATCTTTGCTGG 4216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || || || || || || ||||| || || || | Sbjct 4663 ATGCAGATATTCGTCAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4604 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| |||| ||| | ||| || ||||||||||| ||||| ||||| ||||| Sbjct 4603 GACACGATAGAGAACGTGAAAGCCAAA-ATTCAAGACAAAGAGGGAATTCCTCCAGATCA 4545 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||| |||||||||| || Sbjct 4544 GCAACGACTGATCTTTGCTGG 4524 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || || || || || || ||||| || || || | Sbjct 4971 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4912 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| |||| ||| | ||| || ||||||||||| ||||| ||||| ||||| Sbjct 4911 GACACGATAGAGAACGTGAAAGCCAAA-ATTCAAGACAAAGAGGGAATTCCTCCAGATCA 4853 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||| |||||||||| || Sbjct 4852 GCAACGACTGATCTTTGCTGG 4832 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || || || || || || ||||| || || || | Sbjct 5279 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 5220 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| |||| |||| ||| | ||| || ||||||||||| ||||| ||||| ||||| Sbjct 5219 GACACGATAGAGAACGTGAAAGCCAAA-ATTCAAGACAAAGAGGGAATTCCTCCAGATCA 5161 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||| |||||||||| || Sbjct 5160 GCAACGACTGATCTTTGCTGG 5140 Score = 86.0 bits (94), Expect = 6e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGA-AAC 24777 || ||||| || || || || || || ||||| || || || | ||||| |||| ||| Sbjct 5572 AAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCTGACACGATAGAGAAC 5513 Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837 | ||| | ||| || ||||||||||| ||||| ||||| ||||| ||||| ||||||| Sbjct 5512 GTGAAAGCCAAA-ATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAACGACTGATCTT 5454 Query 24838 TGCCGG 24843 ||| || Sbjct 5453 TGCTGG 5448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449792801977800