Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2947 145 1e-28 seq7511 140 5e-27 seq5563 140 5e-27 seq6732 131 3e-24 seq3508 113 7e-19 seq218 104 4e-16 seq4194 86.0 1e-10 >seq2947 Length=22663 Score = 145 bits (160), Expect = 1e-28 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||||| || ||||| |||||||| |||||||| || || || | | Sbjct 9974 TGTACTTGGTGACGGCCTTTGTGCCCTCGGAGACGGCATGCCTGGCGAGCTCTCCTGGGA 9915 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || || ||||||||||| ||||||| ||| || |||||||| | Sbjct 9914 GGATCAGTCGGACAGCGGTCTGGATTTCGCGGGAAGAGATGGTCGATCGCTTGTTGTAGT 9855 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || ||||| | | | || |||| || ||| || ||||| ||||||| Sbjct 9854 GCGCAAGACGCGAAGCCTCAGCAGCAGTACGTTCGAGCACGTCATTCACAAATGAGTTCA 9795 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||||| || || | || |||||| || |||||||||||||| || Sbjct 9794 TGATGGACATCGCCTTTGAAGAAACTCCGGTGTCGGGATGAACCTGCTTGAGCACACGGT 9735 Query 1485710 AAA 1485712 ||| Sbjct 9734 AAA 9732 >seq7511 Length=6127 Score = 140 bits (154), Expect = 5e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||| |||||||| || || ||||| ||| |||| || || || | | Sbjct 5007 TGTACTTGGTCACGGCTTTGGTACCTTCGGACACGGCATGCTTGGCAAGCTCTCCTGGGA 4948 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || || ||||||||||||||||| | ||| || |||||||| | Sbjct 4947 GGATCAGTCGGACAGCGGTCTGGATCTCGCGAGAAGAGATGGTCGATCGCTTGTTGTAGT 4888 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || |||||| | | ||||| |||| || |||||| ||||||||||||| Sbjct 4887 GAGCAAGACGCGAGGCCTCAGCTGCTATGCGTTCGAACACGTCGTTCACAAACGAGTTCA 4828 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||||| || || | || |||||| || || |||||||| || Sbjct 4827 TGATGGACATCGCCTTCGACGAAACTCCGGTGTCGGGATGAACTTGCTTGAGTAC 4773 >seq5563 Length=10220 Score = 140 bits (154), Expect = 5e-27 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| |||||||| |||||||| || ||||| ||| |||| || || || | | Sbjct 721 TGTATTTGGTAACGGCCTTCGTACCCTCGGACACGGCATGCTTGGCGAGCTCTCCTGGGA 780 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| ||||| ||||||||||| ||||||| | ||| || |||||||| | Sbjct 781 GGATCAGTCGCACCGCGGTCTGGATTTCGCGGGAGGAGATGGTCGATCGCTTGTTGTAGT 840 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || ||||| | | | || || |||| | |||||| || || ||||||| Sbjct 841 GAGCAAGACGTGAAGCCTCAGCGGCAATACGCTCGAAAACGTCGTTCACGAAAGAGTTCA 900 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| || || | ||| |||||| || || |||||||| || Sbjct 901 TGATCGACATCGCCTTCGACGAAACGCCGGTGTCGGGATGAACTTGCTTGAGAAC 955 >seq6732 Length=7445 Score = 131 bits (144), Expect = 3e-24 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| ||||||||||| || || || || ||||||||| |||| || || || | | Sbjct 5824 TGTACTTCGTGACGGCCTTCGTGCCTTCGGACACGGCGTGCTTGGCGAGCTCTCCTGGAA 5883 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| | || || |||||||| ||||||| || || ||||||||| | Sbjct 5884 GGATCAGTCTGACTGCAGTCTGGATTTCGCGGGATGAAATGGTCGAGCGCTTGTTGTAGT 5943 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || ||||| | | || || |||| | |||||| ||||||||||||| Sbjct 5944 GCGCAAGACGCGAAGCCTCAGCAGCAATACGTTCGAAGACGTCGTTCACAAACGAGTTCA 6003 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||||||||||| || || | || |||||| || ||||||||||| || Sbjct 6004 TGATCGACATCGCCTTTGACGATACTCCTGTGTCGGGATGAACCTGCTTGAGGAC 6058 >seq3508 Length=18377 Score = 113 bits (124), Expect = 7e-19 Identities = 168/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || || ||||| ||||| || ||||||||| | || ||||| || | | Sbjct 3094 TGTACTTGGTCACCGCTTTGGTTCCCTCGGACACGGCGTGCTTCGCGAGTTCTCCTGGAA 3035 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| | |||||| ||||||||||| || | |||||| |||||||| || | Sbjct 3034 GGATCAGTCTCACGGCAGTCTGGATCTCACGCGATGAGATCGTCGACCGCTTGTT-GTAC 2976 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || || || || || | | ||||| || | | ||||| || ||||||||| Sbjct 2975 TGTGCTAGACGTGACGCTTCAGCAGCAATGCGTTCAAAAACATCGTTCACGAACGAGTTC 2916 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 || || ||||| | | || | |||| |||||| || |||||||| ||||| Sbjct 2915 ATAATGGACATTGCCCTAGACGATACGCCCGTGTCGGGATGTACCTGCTTCAGCAC 2860 >seq218 Length=125902 Score = 104 bits (114), Expect = 4e-16 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || |||||||| ||||| || || || || | || ||||| || | | Sbjct 52444 TGTACTTGGTTACCGCCTTGGTTCCCTCGGACACTGCATGTTTCGCGAGTTCTCCTGGGA 52385 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| | ||| ||||||||||| || |||| |||||| |||||||| | Sbjct 52384 GGATCAGTCTCACAGCGGTCTGGATTTCACGGGATGAGATCGTTGACCGCTTGTTGTAGT 52325 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || || | | ||||| || | | |||||||| || ||||||| Sbjct 52324 GTGCTAGACGTGACGCTTCAGCAGCAATGCGTTCAAAAACATCGTTGACGAATGAGTTCA 52265 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | || ||| | || |||||| || || ||||| ||||| Sbjct 52264 TGATTGACATTGCCTTCGAGGACACACCAGTGTCGGGATGTACTTGCTTCAGCAC 52210 >seq4194 Length=14891 Score = 86.0 bits (94), Expect = 1e-10 Identities = 135/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||||||||| |||||||| | ||||| ||| | || || || || ||| Sbjct 10819 TGTATTTGGTGACGGCCTTTGTACCCTCGAACACGGCATGCTTAGCGAGCTC-CCTGGCA 10761 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| ||| ||||||| || ||| ||| | |||||| |||||||| Sbjct 10760 ACATCAGTTGCATAGCGGTCTAGAATTCGTGGGAGGAGATCGTCGAACGCTTGTT----- 10706 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 || || || |||| ||| | || || |||| | |||||| | ||||||| | | Sbjct 10705 TTGCAAGACGTGAAGCCTTGGTAGCAATACGTTCGAATACGTCGTTCAAAAACGAGCTTA 10646 Query 1485650 TGATCGACATCG 1485661 |||| ||||||| Sbjct 10645 TGATTGACATCG 10634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914264110055765