Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7835 102 5e-17 seq1455 102 5e-17 seq2276 82.4 5e-11 >seq7835 Length=5652 Score = 102 bits (112), Expect = 5e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||||||||||||| ||| | || | ||||| ||||| | ||||| | Sbjct 4216 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4275 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| |||||| ||| |||||||| || | ||| |||||||||||||| || Sbjct 4276 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4335 Query 34958 GTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||||||| Sbjct 4336 GTCTTCACGAATATCTGCATG 4356 Score = 102 bits (112), Expect = 5e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||||||||||||| ||| | || | ||||| ||||| | ||||| | Sbjct 4524 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4583 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| |||||| ||| |||||||| || | ||| |||||||||||||| || Sbjct 4584 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4643 Query 34958 GTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||||||| Sbjct 4644 GTCTTGACGAATATCTGCATG 4664 Score = 102 bits (112), Expect = 5e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||||||||||||| ||| | || | ||||| ||||| | ||||| | Sbjct 4832 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4891 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| |||||| ||| |||||||| || | ||| |||||||||||||| || Sbjct 4892 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4951 Query 34958 GTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||||||| Sbjct 4952 GTCTTCACGAATATCTGCATG 4972 Score = 102 bits (112), Expect = 5e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||||||||||||| ||| | || | ||||| ||||| | ||||| | Sbjct 5140 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 5199 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| |||||| ||| |||||||| || | ||| |||||||||||||| || Sbjct 5200 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 5259 Query 34958 GTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||||||| Sbjct 5260 GTCTTCACGAATATCTGCATG 5280 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||||||||||||| ||| | || | ||||| ||||| | ||||| | Sbjct 5448 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 5507 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| |||||| ||| |||||||| || | ||| |||||||||||||| || Sbjct 5508 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 5567 Query 34958 GTCTTTACAAA 34968 ||||| || || Sbjct 5568 GTCTTCACGAA 5578 >seq1455 Length=44427 Score = 102 bits (112), Expect = 5e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||||||||||||| ||| | || | ||||| ||||| | ||||| | Sbjct 93 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 152 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| |||||| ||| |||||||| || | ||| |||||||||||||| || Sbjct 153 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 212 Query 34958 GTCTTTACAAAGATCTGCATG 34978 ||||| || || ||||||||| Sbjct 213 GTCTTCACGAATATCTGCATG 233 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||||||||||||| ||| | || | ||||| ||||| | ||||| | Sbjct 401 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 460 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| |||||| ||| |||||||| || | ||| |||||||| || || || Sbjct 461 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTACCAGTAAGA 520 Query 34958 GTCTTTACAAAGATCTGCAT 34977 || || || || |||||||| Sbjct 521 GTTTTCACGAAAATCTGCAT 540 >seq2276 Length=29858 Score = 82.4 bits (90), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 34834 CTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTT 34893 ||| || ||||| |||| || ||||| ||| | || | |||||| || || | ||||| Sbjct 7764 CTTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATCCCCTCTTTATCCTGAATTTT 7705 Query 34894 TTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCC 34951 | || || || || || | ||| |||||| || || | ||||||||||||||| Sbjct 7704 TGTCTTCAC--ATTCTCAATGGTGTCAGAGGCCTCAACCTCTAATGTTATGGTCTTTCCC 7647 Query 34952 GTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || |||||||| |||||||| Sbjct 7646 GTAAGCGTTTTTACAAATATCTGCAT 7621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325618830585065