Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1455 95.1 9e-15 seq7835 89.7 4e-13 >seq1455 Length=44427 Score = 95.1 bits (104), Expect = 9e-15 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 |||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| | Sbjct 401 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 459 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| || | |||| |||||||| || || || || || || || || ||||| | Sbjct 460 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTACCAGTAAG 519 Query 29766 GGTTTTAACAAATATCTGCAT 29786 ||||| || || |||||||| Sbjct 520 AGTTTTCACGAAAATCTGCAT 540 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 |||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| | Sbjct 93 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 151 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| || | |||| |||||||| || || || || || || || || || || | Sbjct 152 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 211 Query 29766 GGTTTTAACAAATATCTGCAT 29786 || || || ||||||||||| Sbjct 212 CGTCTTCACGAATATCTGCAT 232 >seq7835 Length=5652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 |||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| | Sbjct 4216 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 4274 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| || | |||| |||||||| || || || || || || || || || || | Sbjct 4275 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 4334 Query 29766 GGTTTTAACAAATATCTGCAT 29786 || || || ||||||||||| Sbjct 4335 CGTCTTCACGAATATCTGCAT 4355 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 |||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| | Sbjct 4524 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 4582 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| || | |||| |||||||| || || || || || || || || || || | Sbjct 4583 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 4642 Query 29766 GGTTTTAACAAATATCTGCAT 29786 || || || ||||||||||| Sbjct 4643 CGTCTTGACGAATATCTGCAT 4663 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 |||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| | Sbjct 4832 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 4890 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| || | |||| |||||||| || || || || || || || || || || | Sbjct 4891 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 4950 Query 29766 GGTTTTAACAAATATCTGCAT 29786 || || || ||||||||||| Sbjct 4951 CGTCTTCACGAATATCTGCAT 4971 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 |||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| | Sbjct 5140 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 5198 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| || | |||| |||||||| || || || || || || || || || || | Sbjct 5199 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 5258 Query 29766 GGTTTTAACAAATATCTGCAT 29786 || || || ||||||||||| Sbjct 5259 CGTCTTCACGAATATCTGCAT 5279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385131711302535