Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014-
09-24] 18,635 sequences; 253,242,791 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq1455 95.1 9e-15
seq7835 89.7 4e-13
>seq1455
Length=44427
Score = 95.1 bits (104), Expect = 9e-15
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| |
Sbjct 401 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 459
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| || | |||| |||||||| || || || || || || || || ||||| |
Sbjct 460 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTACCAGTAAG 519
Query 29766 GGTTTTAACAAATATCTGCAT 29786
||||| || || ||||||||
Sbjct 520 AGTTTTCACGAAAATCTGCAT 540
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| |
Sbjct 93 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 151
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| || | |||| |||||||| || || || || || || || || || || |
Sbjct 152 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 211
Query 29766 GGTTTTAACAAATATCTGCAT 29786
|| || || |||||||||||
Sbjct 212 CGTCTTCACGAATATCTGCAT 232
>seq7835
Length=5652
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| |
Sbjct 4216 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 4274
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| || | |||| |||||||| || || || || || || || || || || |
Sbjct 4275 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 4334
Query 29766 GGTTTTAACAAATATCTGCAT 29786
|| || || |||||||||||
Sbjct 4335 CGTCTTCACGAATATCTGCAT 4355
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| |
Sbjct 4524 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 4582
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| || | |||| |||||||| || || || || || || || || || || |
Sbjct 4583 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 4642
Query 29766 GGTTTTAACAAATATCTGCAT 29786
|| || || |||||||||||
Sbjct 4643 CGTCTTGACGAATATCTGCAT 4663
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| |
Sbjct 4832 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 4890
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| || | |||| |||||||| || || || || || || || || || || |
Sbjct 4891 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 4950
Query 29766 GGTTTTAACAAATATCTGCAT 29786
|| || || |||||||||||
Sbjct 4951 CGTCTTCACGAATATCTGCAT 4971
Score = 89.7 bits (98), Expect = 4e-13
Identities = 106/141 (75%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|||||| | |||| || ||||||||| || ||||| |||||||||||||| |||||| |
Sbjct 5140 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG-AATTTTGGC 5198
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| || | |||| |||||||| || || || || || || || || || || |
Sbjct 5199 TTTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAG 5258
Query 29766 GGTTTTAACAAATATCTGCAT 29786
|| || || |||||||||||
Sbjct 5259 CGTCTTCACGAATATCTGCAT 5279
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385131711302535
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |