Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2032 212 5e-49 seq2124 111 1e-18 >seq2032 Length=33350 Score = 212 bits (234), Expect = 5e-49 Identities = 557/845 (66%), Gaps = 4/845 (0%) Strand=Plus/Plus Query 281632 AGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACC 281691 ||| ||||| ||||| || | ||| | | ||||||| ||| ||||| || || | ||| Sbjct 4635 AGGGATTGTGGTGTTCCTCTTAATCAAAGCAGTCATAACACCTCCAGCAGTCTCAATACC 4694 Query 281692 AAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACC 281751 ||| || || |||| |||||||| || | || || ||| | |||| | | || Sbjct 4695 AAGCGAGAGTGGAGCGACATCAAGAAGTAGAAGATCTTGGACCGCTTCAGATTTATCGCC 4754 Query 281752 AACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGT 281811 ||| || || || || | |||||||| || || || |||||||| || || | || Sbjct 4755 TGAAAGGATGGCGGCCTGCACCGCAGCACCGTAAGCGACTGCTTCATCTGGGTTGATAGA 4814 Query 281812 TTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACG 281871 || || |||| ||| ||| || | || || ||||| | | || ||||||||||| Sbjct 4815 TTTGTTCAGTTCTTTTCCAGAAAACAGATCAGACAGAAGCTTTTGCACTTTAGGAATACG 4874 Query 281872 AGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAA 281931 | || |||||||| | |||||| || | |||||| || |||| ||| | |||| Sbjct 4875 CGTCGAACCTCCAACAAGTACAATGTCGTTCACCTGACTCTTGTCCATTTTGGCATCCCT 4934 Query 281932 TAAAACTTTTTCAAC-GGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGA 281990 | | || ||||| |||| || | | | | || | || | |||||| || || | Sbjct 4935 AAGAGACTTCTCAACAGGGTCCATGGTC-GACCGGAAGAGATCGGCACAAAGCTCCTCAA 4993 Query 281991 ATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAA 282050 | || | |||| | | ||||||| ||||| || | || |||| |||| Sbjct 4994 AGCGGGCACGGGTAATGTTCGTGTAGAAATCAATGCCTTCAAAGAGTGAGTCAATCTCAA 5053 Query 282051 TCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTC 282110 | | || || | || || || |||| ||||||||| ||||| || || || | || | Sbjct 5054 TGGAAGCCTGCGATGACGATGAAAGTGTACGTTTAGCGCGTTCGCAAGCAGTACGAAGGC 5113 Query 282111 TTCGTAAGGC-TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCA 282169 || | || | | | || || | ||| | || | ||||| ||||| ||| | Sbjct 5114 GTCTGAGCGCACGAGGATTAGTG-TTTAGGTCTTTCTTGTGTTTTCGTTTGAACTCTGCC 5172 Query 282170 ACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGAC 282229 ||| | | || | || || || || || || ||||| | | || | ||| | Sbjct 5173 ACAAAGTGGTTGACCATGCGGTTGTCGAAGTCCTCCCCTCCAAGATGCGTGTCTCCAGCA 5232 Query 282230 GTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCA 282289 |||| | |||| ||||| |||||||||| | | | | || ||| |||||| Sbjct 5233 GTAGACTTCACTTCGAAAATGCCATCTTCAATGGTTAGGATGGACACGTCAAATGTTCCA 5292 Query 282290 CCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATAC 282349 || || | |||||| || || ||||| | || | || || || |||||||| Sbjct 5293 CCTCCAAGATCAAATATGAGAACATTTCTCTCCCCGGTACCCTTCTTGTCGAGACCATAT 5352 Query 282350 GCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTT 282409 || | ||||||||| ||||| || || || |||| | ||||||||||| || || | Sbjct 5353 GCGATAGCAGCAGCTGTTGGCTCGTTTATGATTCGAAGGACATTAAGACCGGCGATAGCT 5412 Query 282410 CCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACG 282469 |||||||| ||||||||||| | || || || ||||| || || || || ||||| ||| Sbjct 5413 CCTGCATCCTTAGTGGCTTGGCGCTGAGAGTCATTAAAGTAAGCGGGGACGGTAATGACG 5472 Query 282470 GCATC 282474 || || Sbjct 5473 GCGTC 5477 >seq2124 Length=31866 Score = 111 bits (122), Expect = 1e-18 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || |||||||||||||| || | ||||||||||| || || || || |||| || || Sbjct 25667 TTCTTATCAAGACCATATGCGATGGCAGCAGCAGTAGGCTCGTTGATTATTCGCACGACG 25608 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| | || ||||| || |||||||| | ||| | |||||| || || Sbjct 25607 TTTAGGCCAGCAATCGTCCCAGCATCCTTTGTGGCTTGACGTTGCGCATCGTTGAAGTAC 25548 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 || || ||||| | ||| |||| | || || ||||||| ||| Sbjct 25547 GCTGGGACAGTGACAACAGCATGCTTCACCTCCTTTCCAAGATA 25504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739715500251510