Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2276 111 3e-19 seq7835 109 1e-18 seq1455 109 1e-18 >seq2276 Length=29858 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || | || ||||||||||| || |||||||| ||||| ||||||||| Sbjct 6555 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 6496 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||||||| ||||| ||||| | ||| ||||| | ||| || ||||| || ||| Sbjct 6495 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 6436 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || || ||||| || |||||| Sbjct 6435 AGAGTTTTCACAAAGATTTGCATT 6412 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || | || ||||||||||| || |||||||| ||||| ||||||||| Sbjct 7160 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 7101 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || |||||||| ||||| ||||| | ||| ||||| | ||| || ||||| || ||| Sbjct 7100 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 7041 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || || ||||| || |||||| Sbjct 7040 AGAGTTTTCACAAAGATTTGCATT 7017 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || ||||| || ||||| || || ||||| |||||||| || ||||| Sbjct 6254 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 6195 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||||||||| ||||| | ||| || || | || ||||| || || || Sbjct 6194 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 6135 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||| || ||||| || ||||| Sbjct 6134 AGCGTTTTCACAAAGATTTGCAT 6112 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || || || || || || || ||||| || || ||||| |||||||| || ||||| Sbjct 7461 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 7402 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||||||||| ||||| | ||| || || | || ||||| || || || Sbjct 7401 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 7342 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||| || ||||| || |||||| Sbjct 7341 AGCGTTTTCACAAAGATTTGCATT 7318 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || |||||||| || || || || ||||| ||||| |||| || ||||| ||||| || Sbjct 7742 TGCTGATCTGGTGGGATCCCCTCTTTATCCTGAATTTTTGTCTTCACATTCTCAATGGTG 7683 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | || || || || ||||| ||||| || || | ||| ||||||||||||||| Sbjct 7682 TCAGAGGCCTCAACCTCTAATGTTATGGTCTTTCCCGTAAGCGTTTTTACAAATATCTGC 7623 Query 82809 AT 82810 || Sbjct 7622 AT 7621 >seq7835 Length=5652 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| ||| ||||||||||| ||||| || || |||||||| || ||| Sbjct 4216 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4275 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || ||||| ||| | || || || | || || ||||| || || | | Sbjct 4276 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4335 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 4336 GTCTTCACGAATATCTGCAT 4355 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| ||| ||||||||||| ||||| || || |||||||| || ||| Sbjct 4524 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4583 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || ||||| ||| | || || || | || || ||||| || || | | Sbjct 4584 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4643 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 4644 GTCTTGACGAATATCTGCAT 4663 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| ||| ||||||||||| ||||| || || |||||||| || ||| Sbjct 4832 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4891 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || ||||| ||| | || || || | || || ||||| || || | | Sbjct 4892 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4951 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 4952 GTCTTCACGAATATCTGCAT 4971 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| ||| ||||||||||| ||||| || || |||||||| || ||| Sbjct 5140 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 5199 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || ||||| ||| | || || || | || || ||||| || || | | Sbjct 5200 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 5259 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 5260 GTCTTCACGAATATCTGCAT 5279 Score = 96.9 bits (106), Expect = 7e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| ||| ||||||||||| ||||| || || |||||||| || ||| Sbjct 5448 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 5507 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || ||||| ||| | || || || | || || ||||| || || | | Sbjct 5508 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 5567 Query 82791 GTCTTTACAAATA 82803 ||||| || |||| Sbjct 5568 GTCTTCACGAATA 5580 >seq1455 Length=44427 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| ||| ||||||||||| ||||| || || |||||||| || ||| Sbjct 93 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 152 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || ||||| ||| | || || || | || || ||||| || || | | Sbjct 153 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 212 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 213 GTCTTCACGAATATCTGCAT 232 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| ||| ||||||||||| ||||| || || |||||||| || ||| Sbjct 401 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 460 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || ||||| ||| | || || || | || || ||||| || || | Sbjct 461 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTACCAGTAAGA 520 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || |||||||| Sbjct 521 GTTTTCACGAAAATCTGCAT 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981592778017265