Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq7511 118 2e-20 seq2947 116 5e-20 seq5563 111 2e-18 seq6732 105 1e-16 seq3508 95.1 2e-13 >seq7511 Length=6127 Score = 118 bits (130), Expect = 2e-20 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||| ||||||||||||||||| |||||| || |||| ||||| | | ||| Sbjct 4812 AAGGCGATGTCCATCATGAACTCGTTTGTGAACGACGTGTTCGAACGCATAGCAGCTGAG 4871 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 ||| || || || | || ||||||||| || ||| | ||||||||||||||| Sbjct 4872 GCCTCGCGTCTTGCTCACTACAACAAGCGATCGACCATCTCTTCTCGCGAGATCCAGACC 4931 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || |||||| | | || || || |||| ||| ||||| ||||| || |||| Sbjct 4932 GCTGTCCGACTGATCCTCCCAGGAGAGCTTGCCAAGCATGCCGTGTCCGAAGGTACCA 4989 >seq2947 Length=22663 Score = 116 bits (128), Expect = 5e-20 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 |||||||||||||| || ||| |||| | | || ||| || | ||||| ||| Sbjct 9740 GTGCTCAAGCAGGTTCATCCCGACACCGGAGT----TTCTTCAA--AGGCGATGTCCATC 9793 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGCG 725039 |||||||| ||||| || ||| || |||| || | | | ||||| || || ||| Sbjct 9794 ATGAACTCATTTGTGAATGACGTGCTCGAACGTACTGCTGCTGAGGCTTCGCGTCTTGCG 9853 Query 725040 CGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATC 725099 | || ||||||||| || ||| | ||||| ||||||||||| || || |||||| Sbjct 9854 CACTACAACAAGCGATCGACCATCTCTTCCCGCGAAATCCAGACCGCTGTCCGACTGATC 9913 Query 725100 ATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | | || || || |||||||| ||||||||||||||||| Sbjct 9914 CTCCCAGGAGAGCTCGCCAGGCATGCCGTCTCCGAGGGCAC 9954 >seq5563 Length=10220 Score = 111 bits (122), Expect = 2e-18 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||| || || |||||| | |||| || || | | | ||| Sbjct 916 AAGGCGATGTCGATCATGAACTCTTTCGTGAACGACGTTTTCGAGCGTATTGCCGCTGAG 857 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || || || | || ||||||||| || ||| | | ||||| ||||||||| Sbjct 856 GCTTCACGTCTTGCTCACTACAACAAGCGATCGACCATCTCCTCCCGCGAAATCCAGACC 797 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| |||||| | | || || || |||| ||| ||||| |||||||| || Sbjct 796 GCGGTGCGACTGATCCTCCCAGGAGAGCTCGCCAAGCATGCCGTGTCCGAGGGTAC 741 >seq6732 Length=7445 Score = 105 bits (116), Expect = 1e-16 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| | ||||||||||||||||||||||| |||||| | |||| || || | | ||| Sbjct 6019 AAGGCGATGTCGATCATGAACTCGTTTGTGAACGACGTCTTCGAACGTATTGCTGCTGAG 5960 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || || |||| || |||||||||| || || | ||||| |||||||| Sbjct 5959 GCTTCGCGTCTTGCGCACTACAACAAGCGCTCGACCATTTCATCCCGCGAAATCCAGACT 5900 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | |||||| | | || || || |||| ||||||||| ||||| ||||| Sbjct 5899 GCAGTCAGACTGATCCTTCCAGGAGAGCTCGCCAAGCACGCCGTGTCCGAAGGCAC 5844 >seq3508 Length=18377 Score = 95.1 bits (104), Expect = 2e-13 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| || ||||||||||| || ||||| | | || ||||| | | || || Sbjct 2905 ATGTCCATTATGAACTCGTTCGTGAACGATGTTTTTGAACGCATTGCTGCTGAAGCGTCA 2964 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | | ||||||||| |||||| |||| ||||||||||| |||||| Sbjct 2965 CGTCTAGCACAGTACAACAAGCGGTCGACGATCTCATCGCGTGAGATCCAGACTGCCGTG 3024 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | |||||| | | || ||||| || | ||||||||| |||||||| |||| Sbjct 3025 AGACTGATCCTTCCAGGAGAACTCGCGAAGCACGCCGTGTCCGAGGGAACCA 3076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176013819998870