Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq616 178 2e-39 >seq616 Length=79441 Score = 178 bits (196), Expect = 2e-39 Identities = 305/440 (69%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 |||| | |||||| | ||||||||| || ||||| || || | | |||| |||||||||| Sbjct 56679 ACTCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTAT 56620 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 | || || ||||| | ||||| ||||| || || || || | | ||| |||| | | Sbjct 56619 TGCCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACC 56560 Query 69809 CATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAG 69868 |||| ||| | || || || ||| ||| | || | || ||||| ||| | Sbjct 56559 CATTGGATGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGT 56500 Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 | ||| |||||||| || | || || ||||||||||| | |||| ||| || || | Sbjct 56499 TCAAACCGATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAA 56440 Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTA 69988 ||||| | || ||| || |||| | | |||||||| || | ||| | || Sbjct 56439 TACCCGCAATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATA 56380 Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 ||||| |||||||| | ||| || ||||| |||||||| | |||| | |||| Sbjct 56379 GCGTTCCAGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAGAT 56320 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATC 70107 |||| ||||| ||||||| || |||||| ||| |||||| || | ||| || ||||| Sbjct 56319 TGTACGTTTCGATAGCTGCATCGATATCCTCAC-CATGAATACCGACCGCTACCCGCATA 56261 Query 70108 AACATATGCTGAGGTCGTTC 70127 | ||| || || |||| ||| Sbjct 56260 AGCATGTGTTGTGGTCTTTC 56241 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 || ||||| || || || ||||| || || || || | |||||| || |||| ||||| Sbjct 58301 AGCAGATGAGGGTTCACAATTTGGAAATCACCCGAAAGCACTCTGCGGCTGTAGATATTC 58242 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 ||||| || || | ||||| || || || |||||||| || || |||||||||||| Sbjct 58241 GAAGTATACGGCTCAATGGATTCGTTGTTGCCAAGAATTTGCGCCGTCGATGCAGTTGGC 58182 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 || ||||| | ||| ||||| |||| | |||||| Sbjct 58181 ATCGGTGCAAGCAACAAACTGTTTCGTACACCATG 58147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686748793181400