Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014-
09-24] 18,635 sequences; 253,242,791 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq2276 87.8 2e-12
seq616 84.2 2e-11
>seq2276
Length=29858
Score = 87.8 bits (96), Expect = 2e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| ||| |||| || | ||| ||||| || || | ||||| ||||| ||||||
Sbjct 6859 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 6800
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| | |||| | ||| || | ||||| || || || || || | ||| || ||
Sbjct 6799 GCCTTCACGTTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTT 6740
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|| ||||||||||||||||||||
Sbjct 6739 AGCGTTTTCACAAAGATTTGCAT 6717
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/154 (72%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| ||| |||| || | ||| ||||| || || | ||||| ||||| ||||||
Sbjct 6254 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 6195
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||| || | ||||| || || || || || | ||| || ||
Sbjct 6194 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 6135
Query 27225 AGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258
|| ||||||||||||||||||| ||||||||
Sbjct 6134 AGCGTTTTCACAAAGATTTGCA----TGCTAAAA 6105
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| ||| |||| | | ||||||||| || || | || |||||||| |||||
Sbjct 6555 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 6496
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|| | | || | || || | |||||| ||||| ||||| || | || || |||
Sbjct 6495 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 6436
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||||||||||||||||||
Sbjct 6435 AGAGTTTTCACAAAGATTTGCAT 6413
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| ||| |||| | | ||||||||| || || | || |||||||| |||||
Sbjct 7160 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 7101
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|| | | || | || || | |||||| ||||| ||||| || | || || |||
Sbjct 7100 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 7041
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|||||||||||||||||||||||
Sbjct 7040 AGAGTTTTCACAAAGATTTGCAT 7018
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164
||||| ||| |||| || | ||| ||||| || || | ||||| ||||| ||||||
Sbjct 7461 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 7402
Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224
|||| |||| | ||| || | ||||| || || || || || | ||| || ||
Sbjct 7401 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 7342
Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247
|| ||||||||||||||||||||
Sbjct 7341 AGCGTTTTCACAAAGATTTGCAT 7319
>seq616
Length=79441
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/220 (69%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA--- 131800
|| ||||| || |||||||| || || | ||| | ||| | || ||| || |||
Sbjct 56677 TCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTG 56618
Query 131801 CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCG 131860
|||||||||| ||| | ||| | | |||||||||||||| ||||| || |||| ||
Sbjct 56617 CCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCA 56558
Query 131861 TTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTG 131920
|||| | || || |||| |||| | ||| |||| | ||||| || |||||
Sbjct 56557 TTGGATGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTC 56498
Query 131921 AGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATT 131960
| || || ||||| || || || ||||| || ||||
Sbjct 56497 AAACCGATTCCTCCAGCGCTCTTCGATATTAGAGCACATT 56458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424837891422120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |