Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2276 87.8 2e-12 seq616 84.2 2e-11 >seq2276 Length=29858 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| |||| || | ||| ||||| || || | ||||| ||||| |||||| Sbjct 6859 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 6800 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| | |||| | ||| || | ||||| || || || || || | ||| || || Sbjct 6799 GCCTTCACGTTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTT 6740 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 || |||||||||||||||||||| Sbjct 6739 AGCGTTTTCACAAAGATTTGCAT 6717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| |||| || | ||| ||||| || || | ||||| ||||| |||||| Sbjct 6254 TTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 6195 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| | ||| || | ||||| || || || || || | ||| || || Sbjct 6194 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 6135 Query 27225 AGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 || ||||||||||||||||||| |||||||| Sbjct 6134 AGCGTTTTCACAAAGATTTGCA----TGCTAAAA 6105 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| |||| | | ||||||||| || || | || |||||||| ||||| Sbjct 6555 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 6496 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 || | | || | || || | |||||| ||||| ||||| || | || || ||| Sbjct 6495 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 6436 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 ||||||||||||||||||||||| Sbjct 6435 AGAGTTTTCACAAAGATTTGCAT 6413 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| |||| | | ||||||||| || || | || |||||||| ||||| Sbjct 7160 TTACCTGCGAAAATCAACCTCTGTTGATCTGGTGGGATTCCTTCTTTATCCTGAATCTTT 7101 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 || | | || | || || | |||||| ||||| ||||| || | || || ||| Sbjct 7100 GCCTTTACATTCTCAATTGTATCCGAGGCTTCCACTTCGAGAGTAATGGTCTTCCCAGTC 7041 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 ||||||||||||||||||||||| Sbjct 7040 AGAGTTTTCACAAAGATTTGCAT 7018 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| ||| |||| || | ||| ||||| || || | ||||| ||||| |||||| Sbjct 7461 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCTTC 7402 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| | ||| || | ||||| || || || || || | ||| || || Sbjct 7401 GCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAGTA 7342 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 || |||||||||||||||||||| Sbjct 7341 AGCGTTTTCACAAAGATTTGCAT 7319 >seq616 Length=79441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA--- 131800 || ||||| || |||||||| || || | ||| | ||| | || ||| || ||| Sbjct 56677 TCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTATTG 56618 Query 131801 CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCG 131860 |||||||||| ||| | ||| | | |||||||||||||| ||||| || |||| || Sbjct 56617 CCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCA 56558 Query 131861 TTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTG 131920 |||| | || || |||| |||| | ||| |||| | ||||| || ||||| Sbjct 56557 TTGGATGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGTTC 56498 Query 131921 AGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATT 131960 | || || ||||| || || || ||||| || |||| Sbjct 56497 AAACCGATTCCTCCAGCGCTCTTCGATATTAGAGCACATT 56458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424837891422120