Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq616 86.0 7e-12 >seq616 Length=79441 Score = 86.0 bits (94), Expect = 7e-12 Identities = 285/440 (65%), Gaps = 5/440 (1%) Strand=Plus/Plus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| ||||| ||||| | ||||| || || ||||||||||||| || || || ||| Sbjct 56241 GAAAGACCACAACACATGCTTATGCGGGTAGCGGTCGGTATTCATGGTGAGGATATCGAT 56300 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCAA-GGTATGTTCATTCACGCAACACCAAC 104334 | | | || || ||| | ||| || ||||| |||| ||| ||| ||||||| Sbjct 56301 GCAGCTATCGAAACGTACAATCTAATGAGTGAACGGTAT-TTCACTCATGCATCACCAAC 56359 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394 | || |||||||| || | | | || ||| | || || || || | | | | Sbjct 56360 AATGTTTAATGCTGGAACGCTATGGCCGCAACTTTCATCGTGTTTTCTGTTGACGATGAG 56419 Query 104395 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 104454 ||||| || || ||||| || | || || | | | ||||| | ||| || ||| | Sbjct 56420 TGAGGATTCGATTGCGGGTATTTACGATACACTGAAGCAATGTGCTCTAATATCGAAGAG 56479 Query 104455 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 104514 ||||| || || || || || | ||| | | | |||| | || ||| | || Sbjct 56480 CGCTGGAGGAATCGGTTTGAACGTGCATAAAATTCGGGCCACTGGTTCATTGATTAGTGG 56539 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || || || ||| |||| | |||||||| | ||||||| ||| || || || Sbjct 56540 CACTAACGGCACATCCAATGGGTTGGTTCCAATGTTACGCGTATACAACAATACTGCTCG 56599 Query 104575 CTATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 || || |||||| || | ||| ||| | | ||| ||||||| |||||||| Sbjct 56600 ATACGTTGATCAAGGCGGCAATAAACGACCAGGAGCCTTTGCAATCTATCTCGAGCCATG 56659 Query 104632 GCACGCGGATATCATGGAGT 104651 ||| || ||||| | |||| Sbjct 56660 GCATGCAGATATTTTCGAGT 56679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583124936687400