Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2226 129 7e-25 seq7835 120 3e-22 seq2276 116 4e-21 seq1455 116 4e-21 >seq2226 Length=30398 Score = 129 bits (142), Expect = 7e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| ||||| || ||||| || ||||||||||||||| || Sbjct 22347 ATGCAAATTTTTGTGAAGACTCTTACTGGAAAGACCATCACTCTTGAGGTTGAGGCATCG 22406 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | || || || || |||||||| ||||| || ||||| || ||| Sbjct 22407 GATACCATCGAAAATGTTAAAGCGAAGATACAGGACAAAGAGGGTATACCTCCCGATCAG 22466 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 || |||||||| || |||||| Sbjct 22467 CAACGTCTAATCTTCGCTGGT 22487 >seq7835 Length=5652 Score = 120 bits (132), Expect = 3e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||||||||| || ||||| || || || ||||| ||| || | Sbjct 4663 ATGCAGATATTCGTCAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4604 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || |||||||| ||||| ||||||||||||||||| ||| Sbjct 4603 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 4544 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || ||||||||| || Sbjct 4543 CAACGACTGATCTTTGCTGGTGAG 4520 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||||||||| || ||||| || || || ||||| ||| || | Sbjct 4355 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4296 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || |||||||| ||||| ||||||||||||||||| ||| Sbjct 4295 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 4236 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 || || || || |||||||||| || Sbjct 4235 CAACGACTGATCTTTGCTGGTATGC 4211 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||||||||| || ||||| || || || ||||| ||| || | Sbjct 4971 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 4912 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || |||||||| ||||| ||||||||||||||||| ||| Sbjct 4911 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 4852 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || ||||||||| || Sbjct 4851 CAACGACTGATCTTTGCTGGTGAG 4828 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||||||||| || ||||| || || || ||||| ||| || | Sbjct 5279 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 5220 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || |||||||| ||||| ||||||||||||||||| ||| Sbjct 5219 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 5160 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || ||||||||| || Sbjct 5159 CAACGACTGATCTTTGCTGGTGAG 5136 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||||||||| || ||||| || || || ||||| ||| || ||| | || Sbjct 5578 TTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCTGACACGATA 5519 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || |||| || |||||||| ||||| ||||||||||||||||| ||||| || || Sbjct 5518 GAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAACGACTG 5459 Query 27535 ATTTTTGCTGGTAAG 27549 || ||||||||| || Sbjct 5458 ATCTTTGCTGGTGAG 5444 >seq2276 Length=29858 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || |||||||| || ||||| || || | ||||||||| | | Sbjct 7621 ATGCAGATATTTGTAAAAACGCTTACGGGAAAGACCATAACATTAGAGGTTGAGGCCTCT 7680 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||| | ||||||||||| || ||||| || || ||||| ||| Sbjct 7681 GACACCATTGAGAATGTGAAGACAAAAATTCAGGATAAAGAGGGGATCCCACCAGATCAG 7740 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | ||||| || |||||| Sbjct 7741 CAGCGTTTGATTTTCGCGGGTAAG 7764 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || |||||||| || || || || || || ||||| || | Sbjct 7318 AATGCAAATCTTTGTGAAAACGCTTACTGGTAAAACGATCACACTCGAGGTGGAAGCGTC 7377 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| ||||||| || || ||||| ||||||||||| || || || || Sbjct 7378 CGATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCA 7437 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGC 27550 |||| | || ||||| || ||||||| Sbjct 7438 GCAGAGGCTTATTTTCGCAGGTAAGC 7463 Score = 113 bits (124), Expect = 5e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || |||||||| || || || || || || ||||| || | Sbjct 6112 ATGCAAATCTTTGTGAAAACGCTTACTGGTAAAACGATCACACTCGAGGTGGAAGCGTCC 6171 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||||| || || ||||| ||||||||||| || || || ||| Sbjct 6172 GATACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAG 6231 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550 ||| | || ||||| || ||||||| Sbjct 6232 CAGAGACTGATTTTCGCAGGTAAGC 6256 Score = 105 bits (116), Expect = 8e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || ||||| || || || || || || || ||||| || | Sbjct 6716 AATGCAAATCTTTGTGAAAACGCTAACTGGTAAAACGATCACACTCGAGGTGGAAGCGTC 6775 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| ||||||| || || ||||| ||||||||||| || || || || Sbjct 6776 CGATACTATTGAAAACGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCA 6835 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGC 27550 |||| | || ||||| || ||||||| Sbjct 6836 GCAGAGACTGATTTTCGCAGGTAAGC 6861 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || || || || ||||| |||||||| || || || | Sbjct 6412 AATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTC 6471 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | ||||| || |||||||| || || ||||| || ||||| || Sbjct 6472 GGATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCA 6531 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||| | | ||||| || ||||| Sbjct 6532 ACAGAGGTTGATTTTCGCAGGTAA 6555 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || || || || ||||| |||||||| || || || | Sbjct 7017 AATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTC 7076 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| | ||||| || |||||||| || || ||||| || ||||| || Sbjct 7077 GGATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCA 7136 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||| | | ||||| || ||||| Sbjct 7137 ACAGAGGTTGATTTTCGCAGGTAA 7160 >seq1455 Length=44427 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||||||||| || ||||| || || || ||||| ||| || | Sbjct 232 ATGCAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCT 173 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || |||||||| ||||| ||||||||||||||||| ||| Sbjct 172 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 113 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || ||||||||| || Sbjct 112 CAACGACTGATCTTTGCTGGTGAG 89 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || ||||| || ||||| || || || ||||| ||| || | Sbjct 540 ATGCAGATTTTCGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTCGAGGCATCT 481 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || |||| || |||||||| ||||| ||||||||||||||||| ||| Sbjct 480 GACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 421 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || || || ||||||||| || Sbjct 420 CAACGACTGATCTTTGCTGGTGAG 397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570177553321200