Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2276 109 5e-19 seq1455 84.2 2e-11 >seq2276 Length=29858 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||||||||| || ||| | |||||||| ||||||||| | || Sbjct 6413 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTCG 6472 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || |||||||| || ||||| |||||| Sbjct 6473 GATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCAA 6532 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 ||| | || || | ||| || || Sbjct 6533 CAGAGGTTGATTTTCGCAGGTAA 6555 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||||||||| || ||| | |||||||| ||||||||| | || Sbjct 7018 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTCG 7077 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||| ||||| || |||||||| || ||||| |||||| Sbjct 7078 GATACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCAA 7137 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 ||| | || || | ||| || || Sbjct 7138 CAGAGGTTGATTTTCGCAGGTAA 7160 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||||||||| || || || ||| | || || | || || || | || Sbjct 7621 ATGCAGATATTTGTAAAAACGCTTACGGGAAAGACCATAACATTAGAGGTTGAGGCCTCT 7680 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || ||||||||| || ||||| || || ||||| ||||| Sbjct 7681 GACACCATTGAGAATGTGAAGACAAAAATTCAGGATAAAGAGGGGATCCCACCAGATCAG 7740 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 |||||||| || | ||| || || Sbjct 7741 CAGCGTTTGATTTTCGCGGGTAA 7763 >seq1455 Length=44427 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 ||| |||||||| || || |||||||| || || ||| | || || || || || || | Sbjct 544 CGCTATGCAGATTTTCGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTCGAGGC 485 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| |||| |||| || ||| ||||||||||||||||| || || || || || Sbjct 484 ATCTGACACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGA 425 Query 27104 TCAACAGCG 27112 ||| || || Sbjct 424 TCAGCAACG 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434817091195200