Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2226 113 1e-19 seq7835 109 1e-18 seq1455 109 1e-18 seq2276 102 2e-16 >seq2226 Length=30398 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| || ||||| || || ||||| | || || |||||||| ||||| | Sbjct 22486 CCAGCGAAGATTAGACGTTGCTGATCGGGAGGTATACCCTCTTTGTCCTGTATCTTCGCT 22427 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||||||||| || || |||||||| |||||||| |||||||| || ||| Sbjct 22426 TTAACATTTTCGATGGTATCCGATGCCTCAACCTCAAGAGTGATGGTCTTTCCAGTAAGA 22367 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | ||||| Sbjct 22366 GTCTTCACAAAAATTTGCAT 22347 >seq7835 Length=5652 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || ||||| || || ||||||| ||| || ||||| || || || | Sbjct 4216 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4275 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || || |||||||| || |||||||| ||||| ||||||||||| || Sbjct 4276 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4335 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 4336 GTCTTCACGAATATCTGCAT 4355 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || ||||| || || ||||||| ||| || ||||| || || || | Sbjct 4524 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4583 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || || |||||||| || |||||||| ||||| ||||||||||| || Sbjct 4584 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4643 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 4644 GTCTTGACGAATATCTGCAT 4663 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || ||||| || || ||||||| ||| || ||||| || || || | Sbjct 4832 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 4891 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || || |||||||| || |||||||| ||||| ||||||||||| || Sbjct 4892 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 4951 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 4952 GTCTTCACGAATATCTGCAT 4971 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || ||||| || || ||||||| ||| || ||||| || || || | Sbjct 5140 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 5199 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || || |||||||| || |||||||| ||||| ||||||||||| || Sbjct 5200 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 5259 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 5260 GTCTTCACGAATATCTGCAT 5279 Score = 102 bits (112), Expect = 2e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || ||||| || || ||||||| ||| || ||||| || || || | Sbjct 5448 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 5507 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || || |||||||| || |||||||| ||||| ||||||||||| || Sbjct 5508 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 5567 Query 211095 GTCTTTACAAA 211105 ||||| || || Sbjct 5568 GTCTTCACGAA 5578 >seq1455 Length=44427 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || ||||| || || ||||||| ||| || ||||| || || || | Sbjct 93 CCAGCAAAGATCAGTCGTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATTTTGGCT 152 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 |||||||| || || |||||||| || |||||||| ||||| ||||||||||| || Sbjct 153 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGGGTGATGGTCTTTCCCGTAAGC 212 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| || || | |||||| Sbjct 213 GTCTTCACGAATATCTGCAT 232 >seq2276 Length=29858 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| |||||||| || || | || || ||||| || | ||| ||||| |||||||||| Sbjct 6861 GCTTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCT 6802 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | ||||||||||| || || || || ||| |||||||| |||||||| || || | Sbjct 6801 TCGCCTTCACGTTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAG 6742 Query 211090 TGAGAGTCTTTACAAACACCTGCATT 211115 | || || || ||||| | |||||| Sbjct 6741 TTAGCGTTTTCACAAAGATTTGCATT 6716 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| |||||||| ||||| | || || ||||| || | ||| ||||| |||||||||| Sbjct 7463 GCTTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCT 7404 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | ||||| ||||| || || || || ||| |||||||| |||||||| || || | Sbjct 7403 TCGCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAG 7344 Query 211090 TGAGAGTCTTTACAAACACCTGCATT 211115 | || || || ||||| | |||||| Sbjct 7343 TAAGCGTTTTCACAAAGATTTGCATT 7318 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| |||||||| || || | || || ||||| || | ||| ||||| |||||||||| Sbjct 6256 GCTTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTTATCCTGGATCT 6197 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 | ||||| ||||| || || || || ||| |||||||| |||||||| || || | Sbjct 6196 TCGCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGATCGTTTTACCAG 6137 Query 211090 TGAGAGTCTTTACAAACACCTGCAT 211114 | || || || ||||| | ||||| Sbjct 6136 TAAGCGTTTTCACAAAGATTTGCAT 6112 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||| || ||||| || | || || || || || || | || || || ||||| || || Sbjct 7764 CTTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATCCCCTCTTTATCCTGAAT-TT 7706 Query 211031 TTGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCG 211089 |||| ||||| || || |||||||||||| |||||||| | || || |||||||||| Sbjct 7705 TTGTCTTCACATTCTCAATGGTGTCAGAGGCCTCAACCTCTAATGTTATGGTCTTTCCCG 7646 Query 211090 TGAGAGTCTTTACAAACACCTGCAT 211114 | || || |||||||| | |||||| Sbjct 7645 TAAGCGTTTTTACAAATATCTGCAT 7621 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||||||||||||||| || ||||| || |||||||| || |||| ||| Sbjct 7315 TCCACGAAGACGTAGGACAAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAG 7256 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTG 210978 ||| | || ||||| || ||||| |||| Sbjct 7255 GGTGCGACCGTCTTCAAGTTGCTTTCCTG 7227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158875239781775