Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1539 104 6e-17 seq4571 102 2e-16 seq7142 87.8 4e-12 >seq1539 Length=42191 Score = 104 bits (114), Expect = 6e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| || ||||||||||| || || ||||| |||||||||||||| |||||||| Sbjct 17325 GAAAATTTGTCCGTCAGTAATAGAAATCACGTTTGTGGGGATATAAGCAGATACATCACC 17384 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAA 4576 ||||| || || | ||| || || || || | |||||| ||||||| Sbjct 17385 GGCTTGCGTCTCTATAACTGGCAAAGCAGTCAATGATCCGCCACCAA 17431 >seq4571 Length=13414 Score = 102 bits (112), Expect = 2e-16 Identities = 180/263 (68%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGG 7506 ||||| | |||||| | || ||||| |||||||| || ||| ||||| | | Sbjct 9609 TATTTTTTGTTTGGTTTGTGGTCGGGTATGTTAGGTACTGCTTTATCTTTGATTGTTCGT 9668 Query 7507 TTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTT 7566 || || ||| || || || ||| ||| |||| | ||| | || || Sbjct 9669 TTGGAGTTATCTAAGCCTGG------AATGTTGTTGTCTAATGGGCAATTGTATAATTCA 9722 Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 ||||||||||| ||||| ||| | || ||||| ||| | || ||||| |||||| || Sbjct 9723 ATTATTACGGCTCATGCTTTTTTGATAATTTTTTTTATGGTAATGCCTAGTATGATTGGT 9782 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 ||||| || |||||| | | ||||| ||| | || ||||| |||||| |||||| | Sbjct 9783 GGTTTTGGTAATTGAATGTTGCCTTTGATGTTGGGGGCTCCAGATATGAGTTTTCCTCGT 9842 Query 7687 CTTAACAATATAAGTTTTTGATT 7709 | || ||| | ||||||||||| Sbjct 9843 TTGAATAATTTGAGTTTTTGATT 9865 >seq7142 Length=6687 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 ||||||||||| |||| ||| | |||||||| ||| | || ||||| |||||| || Sbjct 6435 ATTATTACGGCTCATGATTTTTTGATGATTTT-TTTATGGTGATGCCTAGTATGATTGGT 6493 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 ||||| || |||||| | | ||||| ||| | || || || |||||| ||||| | Sbjct 6494 GGTTTTGGTAATTGAATGCTGCCTTTGATGCTAGGGGCACCAGATATGAGCTTTCCTCGT 6553 Query 7687 CTTAACAATATAAGTTTTTGATT 7709 | || ||| | ||||||||||| Sbjct 6554 TTGAATAATTTGAGTTTTTGATT 6576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192246470132690