Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq616 194 2e-44 >seq616 Length=79441 Score = 194 bits (214), Expect = 2e-44 Identities = 307/440 (70%), Gaps = 0/440 (0%) Strand=Plus/Minus Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 |||| | |||||| | ||||||||| || ||||| ||||| | |||| |||||||||| Sbjct 56679 ACTCGAAAATATCTGCATGCCATGGCTCGAGATAGATTGCAAAGGCTCCTGGTCGTTTAT 56620 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 | || || ||||| | |||| || || || || || || | |||||||||| | | Sbjct 56619 TGCCGCCTTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACC 56560 Query 78217 CGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGG 78276 | || ||||| || || || ||| ||| | ||| | || ||||| ||| | | Sbjct 56559 CATTGGATGTGCCGTTAGTGCCACTAATCAATGAACCAGTGGCCCGAATTTTATGCACGT 56500 Query 78277 ATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 | || |||||||| || |||| ||||||||||| || | |||| ||||||||| | Sbjct 56499 TCAAACCGATTCCTCCAGCGCTCTTCGATATTAGAGCACATTGCTTCAGTGTATCGTAAA 56440 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 78396 ||||| | || || || |||| | | |||||||| || | ||| | | Sbjct 56439 TACCCGCAATCGAATCCTCACTCATCGTCAACAGAAAACACGATGAAAGTTGCGGCCATA 56380 Query 78397 CAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGAT 78456 ||||| |||||||| | ||| || |||||||| || || | |||| | ||||| Sbjct 56379 GCGTTCCAGCATTAAACATTGTTGGTGATGCATGAGTGAAATACCGTTCACTCATTAGAT 56320 Query 78457 TGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCA 78516 |||| ||||| ||||||| || || ||| |||||| || |||||||| ||||| | Sbjct 56319 TGTACGTTTCGATAGCTGCATCGATATCCTCACCATGAATACCGACCGCTACCCGCATAA 56260 Query 78517 ACATATGCTGAGGTCTTTCA 78536 ||| || || ||||||||| Sbjct 56259 GCATGTGTTGTGGTCTTTCA 56240 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 || |||||||| || || ||||| || || || || | ||||| || |||| ||||| Sbjct 58301 AGCAGATGAGGGTTCACAATTTGGAAATCACCCGAAAGCACTCTGCGGCTGTAGATATTC 58242 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 ||||| || || | ||||| ||||| || | |||||| || || || ||||||||| Sbjct 58241 GAAGTATACGGCTCAATGGATTCGTTGTTGCCAAGAATTTGCGCCGTCGATGCAGTTGGC 58182 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATG 77260 || ||||| | ||| ||||| |||| | |||||| Sbjct 58181 ATCGGTGCAAGCAACAAACTGTTTCGTACACCATG 58147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694506985586400