Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2276 86.0 5e-12 >seq2276 Length=29858 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 44182 GTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTT 44241 ||||| || | |||| || || || |||| | ||||||||| | || | || ||||| Sbjct 6267 GTCGTACAACCGCTTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTT 6208 Query 44242 TTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| |||||| ||||| || | || || |||| | ||||||||| | || || Sbjct 6207 ATCCTGGATCTTCGCCTTCACATTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGAT 6148 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || || || || || ||||| |||||||||||| Sbjct 6147 CGTTTTACCAGTAAGCGTTTTCACAAAGATTTGCATG 6111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 44182 GTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTT 44241 ||||| || | |||| || || || |||| | ||||||||| | || | || ||||| Sbjct 6872 GTCGTACAACCGCTTACCTGCGAAAATCAGTCTCTGCTGATCAGGTGGGATTCCCTCCTT 6813 Query 44242 TTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 ||| |||||| ||||| || | || || |||| | ||||||||| | || || Sbjct 6812 ATCCTGGATCTTCGCCTTCACGTTTTCAATAGTATCGGACGCTTCCACCTCGAGTGTGAT 6753 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || || || || || ||||| ||||||||||| Sbjct 6752 CGTTTTACCAGTTAGCGTTTTCACAAAGATTTGCAT 6717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359908641117795