Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20cantonensis_20[genbank_20GCA_5F000950995.1_202014- 09-24] 18,635 sequences; 253,242,791 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1455 125 2e-23 seq7835 116 9e-21 seq2226 113 1e-19 seq2276 104 6e-17 >seq1455 Length=44427 Score = 125 bits (138), Expect = 2e-23 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || || || || |||||||||||||| || || ||| Sbjct 537 CAGATTTTCGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTCGAGGCATCTGAC 478 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || ||||| |||||||| ||||| ||||| || |||||| Sbjct 477 ACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAA 418 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 417 CGACTGATCTTTGCTGG 401 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || |||||||||||||| || || ||| Sbjct 229 CAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCTGAC 170 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || ||||| |||||||| ||||| ||||| || |||||| Sbjct 169 ACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAA 110 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 109 CGACTGATCTTTGCTGG 93 >seq7835 Length=5652 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || |||||||||||||| || || ||| Sbjct 4352 CAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCTGAC 4293 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || ||||| |||||||| ||||| ||||| || |||||| Sbjct 4292 ACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAA 4233 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 4232 CGACTGATCTTTGCTGG 4216 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || |||||||||||||| || || ||| Sbjct 4968 CAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCTGAC 4909 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || ||||| |||||||| ||||| ||||| || |||||| Sbjct 4908 ACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAA 4849 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 4848 CGACTGATCTTTGCTGG 4832 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || ||||| || |||||||||||||| || || ||| Sbjct 5276 CAGATATTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCTGAC 5217 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || ||||| |||||||| ||||| ||||| || |||||| Sbjct 5216 ACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAA 5157 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 5156 CGACTGATCTTTGCTGG 5140 Score = 114 bits (126), Expect = 3e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 |||||||| || || || ||||| || |||||||||||||| || || ||||| || Sbjct 5578 TTCGTGAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCTGACACGATA 5519 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 |||||||| ||| || ||||| |||||||| ||||| ||||| || ||||||||||| Sbjct 5518 GAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAACGACTG 5459 Query 178050 ATCTTCGCCGG 178060 ||||| || || Sbjct 5458 ATCTTTGCTGG 5448 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || |||||||||||||| || || ||| Sbjct 4660 CAGATATTCGTCAAGACGCTTACGGGAAAGACCATCACCCTCGAGGTCGAGGCATCTGAC 4601 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| || ||||| |||||||| ||||| ||||| || |||||| Sbjct 4600 ACGATAGAGAACGTGAAAGCCAAAATTCAAGACAAAGAGGGAATTCCTCCAGATCAGCAA 4541 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 4540 CGACTGATCTTTGCTGG 4524 >seq2226 Length=30398 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||| ||||| || ||||| || ||||| || ||||| || || || Sbjct 22350 CAAATTTTTGTGAAGACTCTTACTGGAAAGACCATCACTCTTGAGGTTGAGGCATCGGAT 22409 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || ||| ||||| ||||||||||| || || ||||| || |||||| Sbjct 22410 ACCATCGAAAATGTTAAAGCGAAGATACAGGACAAAGAGGGTATACCTCCCGATCAGCAA 22469 Query 178044 CGACTTATCTTCGCCGG 178060 || || |||||||| || Sbjct 22470 CGTCTAATCTTCGCTGG 22486 >seq2276 Length=29858 Score = 104 bits (114), Expect = 6e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| || || || ||||||||||| |||||||||||| || || Sbjct 6720 CAAATCTTTGTGAAAACGCTAACTGGTAAAACGATCACACTCGAGGTGGAAGCGTCCGAT 6779 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| ||||| || || |||||||| || || ||||| Sbjct 6780 ACTATTGAAAACGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAGCAG 6839 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| || ||||| || || Sbjct 6840 AGACTGATTTTCGCAGGTAA 6859 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| || || || ||||||||||| |||||||||||| || || Sbjct 6115 CAAATCTTTGTGAAAACGCTTACTGGTAAAACGATCACACTCGAGGTGGAAGCGTCCGAT 6174 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || || |||||||| || || ||||| Sbjct 6175 ACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAGCAG 6234 Query 178044 CGACTTATCTTCGCCGGAAA 178063 |||| || ||||| || || Sbjct 6235 AGACTGATTTTCGCAGGTAA 6254 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| || || || || || || ||||| |||||| ||| || Sbjct 6416 CAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTCGGAT 6475 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||||||| |||||||||||||| || || || || Sbjct 6476 ACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCAACAG 6535 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | | || ||||| || || Sbjct 6536 AGGTTGATTTTCGCAGGTAA 6555 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| || || || || || || ||||| |||||| ||| || Sbjct 7021 CAAATCTTTGTGAAAACTCTGACTGGGAAGACCATTACTCTCGAAGTGGAAGCCTCGGAT 7080 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||||||| |||||||||||||| || || || || Sbjct 7081 ACAATTGAGAATGTAAAGGCAAAGATTCAGGATAAAGAAGGAATCCCACCAGATCAACAG 7140 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | | || ||||| || || Sbjct 7141 AGGTTGATTTTCGCAGGTAA 7160 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| || || || ||||||||||| |||||||||||| || || Sbjct 7322 CAAATCTTTGTGAAAACGCTTACTGGTAAAACGATCACACTCGAGGTGGAAGCGTCCGAT 7381 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || || |||||||| || || ||||| Sbjct 7382 ACTATTGAAAATGTGAAGGCGAAGATCCAGGATAAGGAGGGAATCCCACCTGATCAGCAG 7441 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | ||||| ||||| || || Sbjct 7442 AGGCTTATTTTCGCAGGTAA 7461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203443796010190