Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq822 93.3 6e-14 >seq822 Length=101035 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || ||||| || || || || ||| | || | ||||| Sbjct 45534 AATGCAAATCTTTGTGAAAACTCTAACTGGAAAGACCATTACTCTCGAAGTGGAAGCCTC 45593 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || ||| ||||| ||||||||||| || ||||| ||||| Sbjct 45594 GGATACAATTGAGAATGTCAAGGCGAAGATTCAGGATAAAGAAGGGATCCCACCGGATCA 45653 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 || ||||| ||||| ||||| || Sbjct 45654 GCAGAGGCTGATTTTCGCAGGTAA 45677 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || ||||| || || || || ||| | || | ||||| Sbjct 45834 AATGCAAATCTTTGTGAAAACTCTAACTGGAAAGACCATTACTCTCGAAGTGGAAGCCTC 45893 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | || ||| ||||| || || || || || ||||||||||| Sbjct 45894 GGATACAATTGAGAATGTCAAGGCGAAGATTCAGGACAAGGAGGGGATCCCACCTGATCA 45953 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 || ||||||||||| ||||| || Sbjct 45954 GCAGAGGCTTATTTTCGCAGGTAA 45977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755395714611200