Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2031 107 2e-18 seq108 84.2 2e-11 >seq2031 Length=37572 Score = 107 bits (118), Expect = 2e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| |||| ||||| |||||||||||||| || ||||| |||||| || || | Sbjct 5078 CCAGCGAAGATTAGACGTTGCTGATCGGGAGGGATACCCTCTTTGTCTTGTATCTTCGCT 5137 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||||| | ||||| |||||||| ||| ||| ||||| | || | ||||| || || || Sbjct 5138 TTAACATTTTCGATGGTGTCCGATGC-CTCAACCTCAAGAGTGATGGTTTTTCCAGTGAG 5196 Query 118718 AGTTTTTACAAAAATCTGCAT 118738 ||| || |||||||| ||||| Sbjct 5197 AGTCTTCACAAAAATTTGCAT 5217 >seq108 Length=252160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| | || || || ||||| || ||||| || || ||||| ||| || || | Sbjct 245063 CCAGCGAAAATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTAGCT 245004 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | || | |||||| | ||||||||||| || | ||||| || || ||| Sbjct 245003 TTCACATTCTCAATGGTGTCAGACGCCTCGACCTCGAGAGTGATAGTTTTTCCAGTGAGA 244944 Query 118719 GTTTTTACAAAAATCTGCATG 118739 || |||||||||||||||||| Sbjct 244943 GTCTTTACAAAAATCTGCATG 244923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433796645825728