Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq109 147 2e-30 seq2031 91.5 1e-13 >seq109 Length=251363 Score = 147 bits (162), Expect = 2e-30 Identities = 289/425 (68%), Gaps = 2/425 (0%) Strand=Plus/Plus Query 23450 TCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGA 23509 || |||||||| |||||||| || | ||||| || || |||| ||||||||||| ||| Sbjct 60334 TCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTATTGCCGCCTTGA 60393 Query 23510 TCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCG 23569 || ||||| || || || |||||||| || | || ||| || || | || ||||| | | Sbjct 60394 TCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGATGTG 60453 Query 23570 CCGCCTACGCCCGCCACAC-TCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTAT 23628 ||| | | |||||| | ||||| | || |||| || || |||| ||||| || Sbjct 60454 CCGTTTGTG-CCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGTTCAAACCGAT 60512 Query 23629 GCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGAT 23688 ||||| | |||||||| | || ||||| |||| || || || || || | || Sbjct 60513 TCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAATACCGGCAAT 60572 Query 23689 GCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGC 23748 ||||| | ||| | || ||||| || || | |||| | || | || Sbjct 60573 CGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATAGTGTTCCAGC 60632 Query 23749 CGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTC 23808 |||| ||| || || || || || |||| | ||||||||||||||| || Sbjct 60633 GTTAAACATTGTTGGTGATGCATGAGTGAAATATCGTTCACTCATTAGATTGTACGTTTC 60692 Query 23809 GATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTG 23868 || || ||||| || ||||| || || ||||||| || || ||||| | ||||| ||| Sbjct 60693 AATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATAAGCATGTGTTG 60752 Query 23869 AGGTC 23873 |||| Sbjct 60753 TGGTC 60757 >seq2031 Length=37572 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || || ||||| ||||| | || ||||| | || Sbjct 5217 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACCATCACTCTTGAGGTTGAGGCATCG 5158 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || ||| || ||| ||||| || || | || ||||| ||| Sbjct 5157 GACACCATCGAAAATGTTAAAGCGAAGATACAAGACAAAGAGGGTATCCCTCCCGATCAG 5098 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || |||||||| |||||||| Sbjct 5097 CAACGTCTAATCTTCGCTGG 5078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445730827841280