Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq109 127 3e-24 >seq109 Length=251363 Score = 127 bits (140), Expect = 3e-24 Identities = 290/434 (67%), Gaps = 2/434 (0%) Strand=Plus/Plus Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427 |||||| | |||||| || || | || || || | | |||| || ||||| || || || Sbjct 60330 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTATTGCCGCC 60389 Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487 ||||| | ||||| ||| || || || || || | |||||||||| | || || || Sbjct 60390 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 60449 Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547 | | || || || ||| || | ||| |||| ||||| ||| | | ||| Sbjct 60450 TGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGTTCAAACC 60509 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 ||||| || || | || || |||| || ||| | || || || ||||| || || | Sbjct 60510 GATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAATACCGGC 60569 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG-AGTAGTTC 63666 || ||| || |||| | | |||||||| || | || | | ||| |||| Sbjct 60570 AATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATAGT-GTTC 60628 Query 63667 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63726 | || ||||| | || || || || || || || || |||| | ||||||||||| Sbjct 60629 CAGCGTTAAACATTGTTGGTGATGCATGAGTGAAATATCGTTCACTCATTAGATTGTACG 60688 Query 63727 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786 | |||||||||| || |||||| |||||| || || || || ||||| | ||||| Sbjct 60689 TTTCAATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATAAGCATGT 60748 Query 63787 GCTGAGGTCTTTCA 63800 | || |||| |||| Sbjct 60749 GTTGTGGTCGTTCA 60762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629767340555520