Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq109 163 4e-35 >seq109 Length=251363 Score = 163 bits (180), Expect = 4e-35 Identities = 318/466 (68%), Gaps = 4/466 (1%) Strand=Plus/Plus Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 |||||| | |||||| || || | || || || | | |||| |||||||| || || || Sbjct 60330 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTATTGCCGCC 60389 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 ||||| | ||||| ||| || || || || || | |||||||||| | |||||||| Sbjct 60390 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 60449 Query 80160 TGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 80219 ||| || || || ||| || | ||| |||| ||||| ||| | | ||| Sbjct 60450 TGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGTTCAAACC 60509 Query 80220 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 80279 ||||| || || | || || |||| || ||| | || || |||||||| || || | Sbjct 60510 GATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAATACCGGC 60569 Query 80280 TATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 80339 || ||| ||| |||| | | |||||||| || | || | | ||||| Sbjct 60570 AATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATAGTGTTCC 60629 Query 80340 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 80399 || ||||| | || || || || || || || || |||| || |||||||||||| Sbjct 60630 AGCGTTAAACATTGTTGGTGATGCATGAGTGAAATATCGTTCACTCATTAGATTGTACGT 60689 Query 80400 CTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTG 80459 |||||||||| || |||||| |||||| || ||||| || ||||| | |||||| Sbjct 60690 TTCAATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATAAGCATGTG 60749 Query 80460 CTGAGGTCTTTCAACGATCT-TGTTATTT--ATTTTCAACA-AGTA 80501 || |||| |||| ||| || ||||| || ||||||| |||| Sbjct 60750 TTGTGGTCGTTCAGCGACCTAAAATATTTGCATATTCAACATAGTA 60795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718211482149760