Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq109 136 5e-27 >seq109 Length=251363 Score = 136 bits (150), Expect = 5e-27 Identities = 312/466 (67%), Gaps = 4/466 (1%) Strand=Plus/Plus Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 |||||| | |||||| || || | || || || | | |||| || ||||| || || || Sbjct 60330 AATATCTGCATGCCATGGCTCGAGATAGATTGCAAAAGCTCCTGGTCGTTTATTGCCGCC 60389 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 ||||| | ||||| ||| || || || || || | |||||||||| | |||||||| Sbjct 60390 TTGATCAACGTATCGAGCAGTATTGTTGTATACGCGTAACATTGGAACCAACCCATTGGA 60449 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACC 72302 || || || || ||| || | ||| |||| ||||| || | | ||| Sbjct 60450 TGTGCCGTTTGTGCCGCCAATCAAAGAACCAGTGGCCCGAATTTTATGTACGTTCAAACC 60509 Query 72303 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTC 72362 ||||| || || | || || |||| || ||| | || || |||||||| || || | Sbjct 60510 GATTCCTCCAGCACTCTTCGATATTAGAGCACATTGCTTCAATGTATCATAAATACCGGC 60569 Query 72363 TATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCC 72422 || ||| || |||| | | |||||||| || | || | | ||||| Sbjct 60570 AATCGAATCCTCACTCATCGTCAACAGAAAACATGATGAAAGCTGCGGCCATAGTGTTCC 60629 Query 72423 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT 72482 || ||||| | || || || || || || || || |||| || |||||||||||| Sbjct 60630 AGCGTTAAACATTGTTGGTGATGCATGAGTGAAATATCGTTCACTCATTAGATTGTACGT 60689 Query 72483 CTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATG 72542 |||||||||| || |||||| ||| || || ||||| || ||||| | ||| || Sbjct 60690 TTCAATAGCTGCATCGATATCCTCGCCATGAATACCGACCGCAACCCGCATAAGCATGTG 60749 Query 72543 CTGAGGTCTTTCAACGATCT-TGTTATTT--ATTTTCAACA-AGTA 72584 || |||| |||| ||| || ||||| || ||||||| |||| Sbjct 60750 TTGTGGTCGTTCAGCGACCTAAAATATTTGCATATTCAACATAGTA 60795 Score = 86.0 bits (94), Expect = 8e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837 |||| |||||| | |||||| || || || | || ||||||||||| ||||| |||||| Sbjct 62292 GTTTTCTTGTGCAAATTTGAAACAGCGATCCGAGCTGCTAGAATGGCGTAATCGGGATGT 62351 Query 72838 TGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 72897 | || || | || || |||| || |||||| |||||||||| || ||||| || Sbjct 62352 TTCGTTGTCATCGAAGCAGCGGTTTCAGCGGCCAGATTGTCCAATTCCACAGTTGTAACA 62411 Query 72898 CCATTATATATTCCTTGGATAACCTTCATAGC 72929 || || || | ||| || || ||||| || Sbjct 62412 CCTTTGTAGAGTCCAGCTATTACTTTCATGGC 62443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671085643091840