Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201 4-09-24] 6,384 sequences; 262,782,696 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq822 120 7e-22 seq108 95.1 3e-14 >seq822 Length=101035 Score = 120 bits (132), Expect = 7e-22 Identities = 115/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| |||||||| ||||| || || || |||||||||||||||||||| Sbjct 45677 TTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTATCCTGAATCTTC 45618 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || ||||| || | ||||| | ||| ||| || || || ||||| ||||| ||||| Sbjct 45617 GCCTTGACATTCTCAATTGTATC-CGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGT 45559 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||| || |||||| Sbjct 45558 TAGAGTTTTCACAAAGATTTGCATT 45534 Score = 111 bits (122), Expect = 4e-19 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| |||||||| |||||||| || || || || || ||||||||||| Sbjct 45977 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCTTC 45918 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || ||||| || | ||||| | ||| ||| || || || ||||| ||||| ||||| Sbjct 45917 GCCTTGACATTCTCAATTGTATC-CGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGT 45859 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 || ||||| ||||| || |||||| Sbjct 45858 TAGAGTTTTCACAAAGATTTGCATT 45834 Score = 105 bits (116), Expect = 2e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || ||||| | | ||| ||||| || || ||||| ||||||||||| || ||| Sbjct 47215 TTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTATCCTGGATTTTT 47156 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| || || || || |||| ||| || ||||| || ||| Sbjct 47155 GTCTTCACATTCTCAATGGTGTCCGAAGCCTCAACTTCTAATGTTATGGTCTTTCCCGTA 47096 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || |||||||||||||||||||| Sbjct 47095 AGCGTTTTTACAAATATCTGCAT 47073 >seq108 Length=252160 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || || || || | || || || ||||| ||||||||||| || || ||||| ||| Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCT 244080 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || |||| || || | || ||||| |||||||| |||||||||||||| Sbjct 244079 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAGA 244020 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| Sbjct 244019 GTTTTCACGAAAATTTGCAT 244000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151304221367872