Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Angiostrongylus_20costaricensis_20[genbank_20GCA_5F000951015.1_20201
4-09-24] 6,384 sequences; 262,782,696 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq822 120 7e-22
seq108 95.1 3e-14
>seq822
Length=101035
Score = 120 bits (132), Expect = 7e-22
Identities = 115/145 (79%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || || ||||| |||||||| ||||| || || || ||||||||||||||||||||
Sbjct 45677 TTACCTGCGAAAATCAGCCTCTGCTGATCCGGTGGGATCCCTTCTTTATCCTGAATCTTC 45618
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || ||||| || | ||||| | ||| ||| || || || ||||| ||||| |||||
Sbjct 45617 GCCTTGACATTCTCAATTGTATC-CGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGT 45559
Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560
|| ||||| ||||| || ||||||
Sbjct 45558 TAGAGTTTTCACAAAGATTTGCATT 45534
Score = 111 bits (122), Expect = 4e-19
Identities = 113/145 (78%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || || ||||| |||||||| |||||||| || || || || || |||||||||||
Sbjct 45977 TTACCTGCGAAAATAAGCCTCTGCTGATCAGGTGGGATCCCCTCCTTGTCCTGAATCTTC 45918
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || ||||| || | ||||| | ||| ||| || || || ||||| ||||| |||||
Sbjct 45917 GCCTTGACATTCTCAATTGTATC-CGAGGCTTCCACTTCGAGAGTAATGGTCTTTCCAGT 45859
Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560
|| ||||| ||||| || ||||||
Sbjct 45858 TAGAGTTTTCACAAAGATTTGCATT 45834
Score = 105 bits (116), Expect = 2e-17
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| || || ||||| | | ||| ||||| || || ||||| ||||||||||| || |||
Sbjct 47215 TTACCCGCGAAAATCAAACGCTGCTGATCTGGTGGGATTCCCTCTTTATCCTGGATTTTT 47156
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || ||||| || | ||| || || || || |||| ||| || ||||| || |||
Sbjct 47155 GTCTTCACATTCTCAATGGTGTCCGAAGCCTCAACTTCTAATGTTATGGTCTTTCCCGTA 47096
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
|| ||||||||||||||||||||
Sbjct 47095 AGCGTTTTTACAAATATCTGCAT 47073
>seq108
Length=252160
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479
|| || || || || | || || || ||||| ||||||||||| || || ||||| |||
Sbjct 244139 CCTGCGAAGATCAGTCGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCTTGGATCTTGGCT 244080
Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539
|| || || |||| || || | || ||||| |||||||| ||||||||||||||
Sbjct 244079 TTCACGTTCTCTATCGTGTCAGATGCCTCGACCTCGAGTGTAATTGTCTTACCAGTAAGA 244020
Query 104540 GTTTTTACAAATATCTGCAT 104559
||||| || || || |||||
Sbjct 244019 GTTTTCACGAAAATTTGCAT 244000
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151304221367872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |